Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2h07
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    27   3.8  
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    27   3.8  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   5.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   6.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   8.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   8.9  

>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 430 DLSRTPGECIRSIVSTKNLPSPLDPVSFLYQSTRDPFSETR*DRIK*NCTFERSSYH 260
           DLS+    C++ + S +N P+ +   S L  S  D  S     R+K N  F  +S+H
Sbjct: 174 DLSKLEKTCVQYMNSVQNFPTDIPVPSNLSISNLDVVS-VEFKRLKRNSIFLINSFH 229


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 661 CLEGLINYFSPSHGGV 708
           CLEG IN  SPSH G+
Sbjct: 88  CLEGKINLVSPSHIGL 103


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 650 DNLAAVSKRENIIFPMKNFNPYILNMAARRDGFLPDSFF 534
           D+    S  ENI  P K  +P++ N+++    F   S F
Sbjct: 450 DSTVRASNNENIPTPDKQASPFVKNLSSTSSPFSQSSAF 488


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 382 LSKLCFGYTLPVFVKGRKGQLSISDVYRCLPYLK 483
           +S+L +   L   +KG KGQ S+SD+Y    Y K
Sbjct: 383 MSELKYSNLLNNSMKGFKGQSSVSDLYSERLYYK 416


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 462 QMLALLKGNTTRRCSRCDVDPRTEEERIGKKTVPSRGHIKNI 587
           +MLA++ G   R  +  D   R  +  + +  VPSR  +KN+
Sbjct: 587 KMLAVVCGALVRAHATADTQYRAFKSYLERGQVPSREFLKNV 628


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 298 CGPIVSRRMDPGYFDIERKQDPREKANFLSKLC 396
           CG +     +P + D +R +DP+ + N +  +C
Sbjct: 112 CGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVC 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,312
Number of Sequences: 5004
Number of extensions: 75410
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)