Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2h07
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    29   4.0  
01_05_0556 + 23236156-23236364,23236623-23236689,23236903-232371...    29   5.3  
01_01_0735 + 5730783-5733320                                           28   7.0  
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171     28   9.3  

>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 450 DAELTFTTFHEHRESVSEA*FRQKICLLPWILFPFYIKVPGIHSPR 313
           D+ L FTTF+ + E   E        L PW L P    VPG+ S R
Sbjct: 143 DSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVP----VPGLESVR 184


>01_05_0556 +
           23236156-23236364,23236623-23236689,23236903-23237108,
           23237284-23237510,23237865-23237926
          Length = 256

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -1

Query: 378 ICLLPWILF----PFYIKVPGIHSPRHDRTALNK 289
           ICL+P  +     PF ++    HSP H RTA N+
Sbjct: 72  ICLVPAEILHPNLPFNMRANKFHSPNHPRTAYNR 105


>01_01_0735 + 5730783-5733320
          Length = 845

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 511 AMWTQELKKKESGRKPSLLAAILRIYGLKFFIGNIIFSLFDTAAKLSIPL 660
           AMW  +    +S R+PS+   +  + G +    N+ ++ FD +  +S+P+
Sbjct: 781 AMWCLQ---SDSSRRPSMSVVVKTMEGERAVDDNLGYNFFDLSPAISVPV 827


>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
          Length = 1054

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 628 FDTAAKLSIPLCLEGLINYFSPSHGGVPFEHAYLYAAGVV 747
           F    +L   LC E L  Y +    G+P    YL+A  VV
Sbjct: 318 FKVNVRLVSKLCGEDLNKYLNEDKDGIPLPQDYLHALDVV 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,688,396
Number of Sequences: 37544
Number of extensions: 443222
Number of successful extensions: 952
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)