Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2h06
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    28   0.37 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    28   0.48 
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   2.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   2.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   3.4  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   4.5  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   4.5  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    24   6.0  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    24   6.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   7.9  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 322 VSRDIRTTTEARRPGTARNTRRPK 251
           V+R +RT+T  RRP T    R+PK
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPK 44


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 0.48
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 322 VSRDIRTTTEARRPGTARNTRRPK 251
           V++ +RT+T  RRP T + +R+PK
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPK 44


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 330 AEP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSAQR 211
           A+P    +G  + PGA+ Q  T   R  +   +++GSA +
Sbjct: 440 AKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGSANK 479


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 308 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 210
           ++HH+GP  +H+E+   +     E L+  A  D
Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 295 EARRPGTARNTRRPKPTELSACCRERSETPRHRN 194
           EA  PG  RNTR+    ++S     ++ET   +N
Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQN 508


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 220 RSETPRHRNKPSRPVWSRRSPHH 152
           R +  R  N P  P W+ R+ HH
Sbjct: 885 REQYERSLNLPMGPEWTTRASHH 907


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 286 RPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRS 161
           RP  + +      TE+SA     SE  R++ K SR  +SR S
Sbjct: 174 RPANSTSVPNAVNTEISAARATESEASRNQTKASRD-YSRAS 214


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 280 GTARNTRRPKPTELSACCRERSETPRHRNKPSRPV 176
           GTA + R   P   SA  + +S TP   N  + PV
Sbjct: 188 GTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +2

Query: 161 TPSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPG 340
           TPS P  S   +P    + A+P        + T S       P + G P V A G+  PG
Sbjct: 430 TPSLPVPSIPAVPGMEAM-AMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPG 488


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 354 PPVTPPGGAEP*AGTSGPPQRPGAQAQRE 268
           PP  PP G EP      PP  PG   +R+
Sbjct: 10  PPPPPPPGFEP-PSQPPPPPPPGYVKKRK 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,511
Number of Sequences: 5004
Number of extensions: 26129
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)