Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2h02
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741 35 0.054
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 31 0.67
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 2.7
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558... 29 2.7
02_02_0415 - 9981345-9981440,9981716-9981784,9982035-9982155,998... 29 2.7
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 4.7
03_06_0334 + 33208266-33208481,33208789-33208940,33209141-332092... 29 4.7
01_01_0483 - 3550429-3551184 29 4.7
06_02_0214 + 13141213-13143741 28 6.2
04_04_1681 + 35322992-35323765 28 6.2
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 28 6.2
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 28 8.3
01_07_0251 + 42289617-42291241,42291424-42292156 28 8.3
>12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741
Length = 118
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 84 GGGSLIHPNVVLTAAHYVAAAKELKIRAGEWDTQNTKEIYPYQDRTV 224
G S++HPNV +T + A WDTQ TKE+ PY R +
Sbjct: 67 GYSSMMHPNVEITRTGFRAVTTCRLPLTNPWDTQQTKEL-PYLSRVL 112
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 268 NRFPLLKSLCITISLTVLS-*YGYISFVFCVSHSPAL 161
N F LLK LCIT+S LS Y Y+S V + P+L
Sbjct: 335 NTFLLLKYLCITLSAVTLSPSYDYLSLVSFLDACPSL 371
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = -3
Query: 177 PIRRL*SSVPWRRQRSERP*APRSDGSASLPLRKRS 70
PIRR S P RR RS R +PR D + P+R+RS
Sbjct: 311 PIRRRSPSPPPRRLRSPRHLSPRRDRGS--PIRRRS 344
>04_04_1636 +
34951841-34954322,34954440-34954627,34955737-34955838,
34956101-34956177,34956258-34956319,34956504-34956511
Length = 972
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1
Query: 152 FLGGGNVVSGREHHVRMDQRASPYVNVQLLSFGLV-VIDWFNLEDGDHPG 6
FLGGG VV GR +R ++ AS Y V+ + + V V+ +L D D G
Sbjct: 246 FLGGGQVVGGRV--IRAEKHASTYDLVERMQYLFVRVVKARDLPDMDVTG 293
>02_02_0415 -
9981345-9981440,9981716-9981784,9982035-9982155,
9982441-9982622,9983320-9984921
Length = 689
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 110 RGAHGRSLRCRRQGTEDQSRRMGHAEHEGDISVSRQ--DSQGNRDTQGLQ*GEPVLRHSS 283
RG HG R R+G + +R HA +G++ +R+ D + R+ + GE R S
Sbjct: 87 RGRHGGGARPWRRGEDRPARGGQHAADDGEVQGTRRGGDLKQRREGRRWTRGETQARESG 146
Query: 284 AVPRDSIGFSPERGSGVSPTGQG 352
+ G GSG + + +G
Sbjct: 147 KA--GNSGRCQSNGSGGNASRKG 167
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 539 RGGGA---RQGHLPGGRGVAPR 595
RGGG R G PGGRGV PR
Sbjct: 37 RGGGRNGPRGGRFPGGRGVEPR 58
>03_06_0334 +
33208266-33208481,33208789-33208940,33209141-33209221,
33209371-33209491
Length = 189
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2
Query: 652 PQXTMPYWT*RFFS*SMGHTRGDPPSPRQVS 560
P PY RFFS S+ +RG PSP+Q S
Sbjct: 53 PPPLTPY---RFFSSSVSESRGTSPSPKQES 80
>01_01_0483 - 3550429-3551184
Length = 251
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 512 LPVALDVHVRGGGARQGHLPGGRGVAPRVPH 604
L A+ + GGG R G + GG G+AP PH
Sbjct: 162 LAAAVSAGMYGGGRRLGVIDGG-GIAPPSPH 191
>06_02_0214 + 13141213-13143741
Length = 842
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 30 VEPVDDNEPEGQKLNVYVGGGS--LIHPNVVLTAAHYVAAA 146
V P E G K+N GGGS LI P++V + A +AA+
Sbjct: 246 VNPSVTREVNGGKVNYMKGGGSTPLIAPDIVYSTATELAAS 286
>04_04_1681 + 35322992-35323765
Length = 257
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 465 RNTCQSQLRRTRLGRFFQLHSTFMCAGGEPDKDTCRGDGGSPLVC-PIDYEK 617
R++C S+L + GR S C + D+ CRG G+P C P Y K
Sbjct: 154 RDSCPSELSKKVNGRTVACRSA--CDVFDTDQYCCRGMYGNPSTCQPTFYSK 203
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 116 AHGRSLRCRRQGTEDQSRRMGHAEHEGDISVSRQDSQGNRDT 241
+HGR LRC +G ++ +G + D+ + G T
Sbjct: 53 SHGRRLRCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGETAT 94
>07_03_0539 -
19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 104 SERGAHGRSLRCRRQGTEDQSRRMGHAEHEGDISVSRQDSQGNR 235
S +G+H RS R ED+ R H E E S+ S G R
Sbjct: 151 SSQGSHSRSTPRRYDDYEDRGSRDKHGERERSASIG-YSSSGRR 193
>01_07_0251 + 42289617-42291241,42291424-42292156
Length = 785
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 261 NLFYDIALLFLETPLDSAPNVGVACLPPARERAPAGVRCFATGWGKDKFGKEGRYQVIM 437
+LF++ L+ L + +V AC A RA ++CFAT G D+F G V M
Sbjct: 406 SLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHM 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,859,120
Number of Sequences: 37544
Number of extensions: 402712
Number of successful extensions: 1559
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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