Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2h02
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    60   2e-11
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 60.5 bits (140), Expect = 2e-11
 Identities = 57/201 (28%), Positives = 86/201 (42%), Gaps = 7/201 (3%)
 Frame = +3

Query: 87  GGSLIHPNVVLTAAHYVAAAK--ELKIRAGEWDTQNTKEIYPYQDRTVKEIVIHKDFN-- 254
           G ++I    VLTAAH +      +L I  GE D  +  E       ++ +++IH  ++  
Sbjct: 189 GATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDII 248

Query: 255 -KGNL-FYDIALLFLETPLDSAPNVGVACLPPAR-ERAPAGVRCFATGWGKDKFGKEGRY 425
            K +    DIALL  E  +     VG ACLP      + AG      GWG   F   G  
Sbjct: 249 EKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSF--NGML 306

Query: 426 QVIMKKVDVPVVDRNTCQSQLRRTRLGRFFQLHSTFMCAGGEPDKDTCRGDGGSPLVCPI 605
             I++K  + ++ +  C           +  +    MCA  +  KD C+ D G P++   
Sbjct: 307 SHILQKTTLNMLTQVECYKY--------YGNIMVNAMCAYAK-GKDACQMDSGGPVLWQN 357

Query: 606 DYEKNRYVQYGIVXWGIXCGE 668
              K R V  GI+ WG  CG+
Sbjct: 358 PRTK-RLVNIGIISWGAECGK 377


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 592 RGDPPSPRQVSLSGSPP 542
           RG PP+P Q    G PP
Sbjct: 36  RGSPPNPSQGPPPGGPP 52



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 583 PPSPRQVSLSGSPP 542
           PP P   ++SG PP
Sbjct: 418 PPIPNMSNMSGMPP 431


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
 Frame = +3

Query: 171 EWD-----TQNTKEIYPYQDRTVKEIVIHKDFNKGNLFYDIALL 287
           EWD      +  K+ YP  D    +I  +    +  LFY + L+
Sbjct: 200 EWDILGVPAERHKKYYPCCDEPYPDIFFNITLRRKTLFYTVNLI 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,114
Number of Sequences: 438
Number of extensions: 3340
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)