Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2h01
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.1  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    26   5.5  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   5.5  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    25   9.5  

>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +1

Query: 223 LDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDAD 402
           LD+E K  P  + V+        +LE ++   A    P    K M+    +      D +
Sbjct: 255 LDKEAKVRPRTNDVYEDFGLCNGYLEAKKLAKANLAEPITEAKKMNKENKQENVGAGDDE 314

Query: 403 TAGESPLHR 429
            A ESP+ R
Sbjct: 315 DASESPMVR 323


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 187 KRDQDSTDDFEHLDRETKQD 246
           K D D  DD+E LD +T +D
Sbjct: 282 KSDSDDEDDYEKLDAKTMKD 301


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
 Frame = +1

Query: 193 DQDSTDDFEHLDRETKQDPADSPVHHHRVATQSFL-------EMERGPAAEHRPPSVAEK 351
           ++D +DD  + D+   +    S +  + +     L       + E   A+  RPP +   
Sbjct: 109 EEDDSDDSVNSDKLENEGSVGSSIDENELVDLDTLLDNDQPEKNESNTASTIRPPWIGNN 168

Query: 352 LMDHMADKFTDSESDADTAGES 417
             DH  DK    ESDA ++ +S
Sbjct: 169 --DHATDKENLLESDASSSNDS 188


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 792 CRVPPVDQRLHKSHLTED 739
           C+ PPVD+ L K  +++D
Sbjct: 274 CKEPPVDEALSKKEISDD 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,526
Number of Sequences: 5004
Number of extensions: 44995
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)