Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2g21
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    30   0.39 
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    29   0.51 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   3.6  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   6.3  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   8.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.4  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   8.4  

>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +1

Query: 124 SSMGSIKCEYKHDGNKPSNNGSQRHDDTTKHDALSTDSSNV*SYASPRWYGNANDRTNAY 303
           SS GS +     DG   ++ G+  HD ++  D+     ++V  Y +    G ++D   A 
Sbjct: 192 SSRGSYRTRVYGDGGGFTDYGNGYHDSSSMSDSRDASDNDVEEY-NEDGDGGSSDAATAN 250

Query: 304 ESNGSRSNVSR 336
            + GSR   ++
Sbjct: 251 STRGSRRTTTK 261


>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 74  IAAKIHRNMQSGSGSKNPPWARSNVNTNMTGINPQIMDPNAMM 202
           IA++  RN+++ S SKN  WARS VNT        + + NA +
Sbjct: 37  IASRQTRNLRALSSSKN--WARSLVNTRSFRAAASVQNNNAQI 77


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 250  SYASPRWYGNANDRTNAYESNGSRSNVSR 336
            S  S RW  N N   N   SN + +NVSR
Sbjct: 1467 SQKSDRWRQNGNVNRNPRVSNNNSTNVSR 1495


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 178 NNGSQRHDDTTKHDALSTDSSNV*SYASPRWYGNANDRTNAYESN 312
           NNG+Q+ + T   D    +S ++ S +S  + G      N  ESN
Sbjct: 549 NNGNQQSERTESADGKKDNSGSISSNSSKTFTGKRVRLGNVIESN 593


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 179 IMDPNAMMTQQSMMPFQQTQAMFN 250
           I+DP+A   +QS + F++   +FN
Sbjct: 96  ILDPDADFVKQSSLAFEKASVLFN 119


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 565 IECCFYEYSVINFG-YNTLCTY*GLVKHIMIHKTEIIVSFSYCASEYT 425
           IE  F ++    FG Y TLC+Y     H++  KT  IV   +   +YT
Sbjct: 234 IEVGFSDFEWSPFGKYLTLCSYHDSTLHLLETKTFSIVFRLHHCLQYT 281


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 645 PKSNSYNAVPPPSVARKAPP 704
           P+SN+  ++P P   R APP
Sbjct: 343 PRSNAAGSIPLPPQGRSAPP 362


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 332  PGNVVAYPTPRALNPGIYQNAQNNQSSTTEQRVFTGTITKTHNDFGFV 475
            P   V +P+P  LN  +++N  NN       R+   ++      FG V
Sbjct: 1124 PKLAVGFPSPSVLNDTLFRNRINNSKPLGVFRIHDPSLFACCYQFGAV 1171


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 544 YSVINFGYNTLCTY 503
           YS+I  GY T+CTY
Sbjct: 313 YSIIITGYETVCTY 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,643
Number of Sequences: 5004
Number of extensions: 68075
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)