Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2g21
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004... 29 2.9
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 29 2.9
03_05_0760 - 27505860-27506148,27507647-27508580,27508677-275087... 29 5.0
02_04_0055 - 19290975-19292312 28 6.6
12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001 28 8.7
11_01_0232 + 1794081-1795175,1796087-1796782 28 8.7
06_01_0296 - 2156895-2157160,2157435-2157527,2157932-2158031,215... 28 8.7
03_04_0069 - 17022468-17023361 28 8.7
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195... 28 8.7
>07_03_1192 +
24698355-24698433,24699312-24699391,24700027-24700483,
24700641-24700794,24700878-24701155,24701225-24701517
Length = 446
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -3
Query: 130 WRIFRSTSRLHISMNFSRNNLTT---AFEKINTLWLLVYDSLN 11
WR+ + + + MN+S+ NL T +F+ + T++ Y SLN
Sbjct: 302 WRVKITVTNFNYRMNYSQWNLVTQHPSFDNLTTIFSFNYKSLN 344
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = -1
Query: 687 RLMVVVLHYKSYFLVGGGF*QAPALGRTCTRVAFHLNGMLGLNVASTSTRSLILGIIPFA 508
RL+ VV+++ GG F A GRT R A L G V S R +P A
Sbjct: 80 RLLPVVVYFH-----GGCFCTESAFGRTYHRYAASLASRAGALVVSVEYRLAPEHPVPAA 134
Query: 507 HTEVW 493
H + W
Sbjct: 135 HDDAW 139
>03_05_0760 -
27505860-27506148,27507647-27508580,27508677-27508792,
27508876-27508945,27509027-27509183
Length = 521
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 636 LRLPKSNSYNAVPPPSVARKAPPSRRDERPT 728
L LP+ SY++ PP + R+A P R P+
Sbjct: 137 LPLPREASYSSSPPSVIVREAKPRRSPSVPS 167
>02_04_0055 - 19290975-19292312
Length = 445
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 597 VCRSCLKRELVKNLRLPKSNSYNAV---PPPSVARKAPPSRR 713
+C CL+ +L + + KS+ + + PPPS + +PPS R
Sbjct: 49 ICAFCLQEKLGRLVSSSKSSPFFPLGGHPPPSASPSSPPSFR 90
>12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001
Length = 676
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 570 TCHSNGMLLVCRSCLKRELVKNLRLPKSNSYNAVPPPSVARKAPP 704
+CHS + + +SC+ + +++ +P PPPS APP
Sbjct: 6 SCHSRSLSWLVKSCIPADPARHIAVPVLCPTPQPPPPSSP-PAPP 49
>11_01_0232 + 1794081-1795175,1796087-1796782
Length = 596
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 570 TCHSNGMLLVCRSCLKRELVKNLRLPKSNSYNAVPPPSVARKAPP 704
+CHS + + +SC+ + +++ +P PPPS APP
Sbjct: 6 SCHSRSLSWLVKSCIPADPARHIAVPVLCPTPQPPPPSSP-PAPP 49
>06_01_0296 -
2156895-2157160,2157435-2157527,2157932-2158031,
2158634-2158738,2158832-2158972,2159056-2159568
Length = 405
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 645 PKSNSYNAVPPPSVARKAPP 704
P + SY++ PPP+ A APP
Sbjct: 67 PLARSYDSPPPPAAAAAAPP 86
>03_04_0069 - 17022468-17023361
Length = 297
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 570 TCHSNGMLLVCRSCLKRELVKNLRLPKSNSYNAVPPPSVARKAPP 704
+CHS + + +SC+ + +++ +P PPPS APP
Sbjct: 6 SCHSRSLSWLVKSCIPADPARHIAVPVLCPTPQPPPPSSP-PAPP 49
>02_01_0293 +
1955439-1956457,1957002-1957322,1957405-1957411,
1957954-1958041,1958143-1958324,1958508-1958644,
1958790-1958856,1959132-1959246,1959390-1959501,
1960420-1960495,1960576-1960758,1961166-1961326,
1961463-1961532,1962721-1962928,1963015-1963304,
1963388-1963509,1963605-1963749,1964040-1964113,
1964464-1964911
Length = 1274
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 311 MAQGQMFPGNVVAYPTPRALNPGIYQNAQNNQSSTTEQR 427
M + P V+ + P A PG QNA + QSST+++R
Sbjct: 607 MLRSLALPFTVLEWTLPSAPRPG--QNAASKQSSTSKER 643
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,735,674
Number of Sequences: 37544
Number of extensions: 444815
Number of successful extensions: 1362
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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