Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2g20
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    33   0.058
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    30   0.31 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    30   0.31 
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    30   0.31 
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    29   0.72 
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.95 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   1.7  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    27   3.8  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   3.8  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   3.8  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   5.0  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   5.0  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    26   5.0  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    26   6.7  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   6.7  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   6.7  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   8.8  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -1

Query: 481  PWKNRIQIA*RQT*TANSLTDYLKPQTGSRTTWRSVKPSFVLLYP-RRSPREKQKAIQQK 305
            PW+NR  ++     T  SL + L+ +    +T   +  S  +  P ++S REK+K + ++
Sbjct: 1079 PWRNRENLSHNNNTTRASLRELLEQEKADASTTTVLSDSRFMKAPTKKSQREKKKELSKQ 1138

Query: 304  APM 296
             P+
Sbjct: 1139 VPI 1141


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +1

Query: 334 WGFYADTRGRRKALLISTSFGF-LFAALSSLSMNWQFMFASKLFGCGFSTASFTLVITLL 510
           W   ++  GR+  LLI   FGF +F    +++ + Q +   + F   F++A  T+V    
Sbjct: 190 WAPLSELSGRKLPLLIG-MFGFGIFNISVAVAKDIQTIMMCRFFSGFFASAPLTVVAAAF 248

Query: 511 GECTGSSHRNVYLFMLNSVNLSSEIIS 591
            +   + HR   + +  ++     ++S
Sbjct: 249 ADMYSNKHRGTAITIFAALVFDGPLVS 275


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
 Frame = -3

Query: 338 PQGKAKSNPAKGADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTIILHTPNSV*LYR 159
           P     S P   A+++   S S TP + + + TTT   +  +++ ++    T  S     
Sbjct: 283 PSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTP 342

Query: 158 PCPANST----ASS*PHESVTLPEQPSVTTTSLFIVEN 57
               NST    ASS P  SV      S ++T L  V +
Sbjct: 343 LSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 380


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 448 QT*TANSLTDYLKPQTGSRTTWRSVKPSFVLLYPRRSPREKQKAIQQKAP 299
           +T T    TD +K   G  T   SV+  F+LL     PR+ +   Q K P
Sbjct: 253 ETLTRQEATDLIKQYGGKVTGAPSVRTDFILLGENAGPRKVETIKQHKIP 302


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
 Frame = -3

Query: 491 VKLAVEKPHPNSLEANINCQF---IDRLLKAANRKPNDVEISKAFLRPLVSA*KPQGKAK 321
           +K    +P  N +  N  C +     RL  A  +    +E+   +LR L     P  K  
Sbjct: 24  IKCDQRRPCSNCIAYNYECTYGQPFKRLRHAPEKYIEFLELRLKYLRGLAEESDPNLKLP 83

Query: 320 SNPAKGADASKPVSLSPTPRS 258
           S  A   D   PV+ SP  RS
Sbjct: 84  SFLAPPNDKDSPVNQSPWKRS 104


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 316 LLFAFPWGFYADTRGRRKALLISTSFGFLFAALSSLSMNW 435
           L+ A  W   ADT GRR A  ++  F  +FA ++  S N+
Sbjct: 132 LVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAGASPNF 171


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 281 SLSPTPRSQLEAATTTLYPNMSMATATTI 195
           S+ P P +   + TTT+ P  SM T TT+
Sbjct: 68  SIVPPPSTSHNSTTTTVPPTTSMNTTTTV 96


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -3

Query: 518 HSPSRVITNVKLAVEKPHPNSLEANINCQFIDRLLKAANRKPNDVEISKAFLRPLVSA*K 339
           HS  R +  V  ++   H NSLEAN+     D   KA N + ++  ++      LV   K
Sbjct: 142 HSAPRSLEGVT-SLSDSHFNSLEANLKAISKDSNNKAHNNRYDESSLTNPEFSILVERLK 200

Query: 338 P-QGKAKSNPAKGADASKPVSLSPT 267
             +   +S   + +   + VSLSP+
Sbjct: 201 SIEENLQSLQERISHCERSVSLSPS 225


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 579 RDYFIQLSVLNPSTELSAGSSVVGYH 656
           RDY    S ++PST  SA SS  G H
Sbjct: 380 RDYPFSASTISPSTPFSAYSSSHGIH 405


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -3

Query: 251  EAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*PHESVTLPEQPSVTTTSL 72
            E +T T+ P  +    TT+++ TP +V          T      E+ T+   P+ T+T  
Sbjct: 852  ETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGT 911

Query: 71   FIVENHKKKTLT 36
              V      T+T
Sbjct: 912  TTVVIQTPTTVT 923



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -3

Query: 251  EAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*PHESVTLPEQPSVTTTSL 72
            E +T T+ P  +    TT+++ TP +V          T      E+ T+   P+ T+T  
Sbjct: 940  ETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGT 999

Query: 71   FIVENHKKKTLT 36
              V      T+T
Sbjct: 1000 TTVVIQTPTTVT 1011



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -3

Query: 251  EAATTTLYPNMSMATATTIILHTPNSV*LYRPCPANSTASS*PHESVTLPEQPSVTTTSL 72
            E +T T+ P  +    TT+++ TP +V          T      E+ T+   P+ T+T  
Sbjct: 1028 ETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGT 1087

Query: 71   FIVENHKKKTLT 36
              V      T+T
Sbjct: 1088 TTVVIQTPTTVT 1099


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 307 FAGLLFAFPWGFYADTRGRRKALL 378
           F  ++F FPW + +  RG RK+++
Sbjct: 137 FILIVFPFPWRYRSSQRGLRKSII 160


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 130 DEAVELAGHGRYNYTLLGVCSIIVVAVAIDMFGYSVVVAAS 252
           DE V +  +GRY   L+G+ S+ V  V  D+F   + + +S
Sbjct: 441 DEIVGMVFYGRYIVLLMGLFSMYVGFVYNDLFSKPMSIFSS 481


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
 Frame = -3

Query: 317 NPAKGADASKPVSLSPTPRSQLEAATTTLYPNMSMATATTIILHTP-NSV*LYRPCPANS 141
           NP    D++   S++PT  +   +ATT    + S +   T    T  +S   Y    A+ 
Sbjct: 134 NPIPRGDSATSTSIAPTYSASDSSATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASP 193

Query: 140 TASS*PHESVTLPEQPSVTTTSLFIVENHKKKTLTIVKLFNILT 9
           T SS      T+    S ++ S F++ N    T +++      T
Sbjct: 194 TTSSNSDNEYTVDVITS-SSLSSFVITNVDSTTTSVINYIGAST 236


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +3

Query: 123 WLRRSGGISWAWPVQLHTVG 182
           WL     +S  WP  +H +G
Sbjct: 269 WLNEKSSLSAGWPANMHVIG 288


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 191 LHTPNSV*LYRPCPA-NSTASS*PHESVTLPEQPSVTTTSLFIVENHKKKTLTIVKLFN 18
           L  PN + +Y PCP+ NST  S     +TL  Q S     + +      K+ TI+ L N
Sbjct: 404 LPLPNPLRMYLPCPSLNSTEVS----VITLAPQHSFLNIVINLNPALALKSYTIITLLN 458


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 603 VLNPSTELSAGSSVVGYHLPTLAVVHF 683
           ++ PST L    S +  H+P+L V H+
Sbjct: 335 IITPSTILDQWLSEIDLHVPSLKVFHY 361


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 314 PAKGADASKPVSLSPTPRS 258
           P + +  SKPVSL PTP S
Sbjct: 302 PGRLSSLSKPVSLPPTPSS 320


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +3

Query: 267 CRAQGDRFACIGAFCWIAFCFSLGLLRGYKRTKEGFTD 380
           CR   DR   I   CW A     G++ GY   K    D
Sbjct: 261 CRVDLDREGPIHDVCWNADSKEFGIVYGYMPAKTAIFD 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,088
Number of Sequences: 5004
Number of extensions: 67984
Number of successful extensions: 212
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)