Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2g20
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   1.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   1.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 553 MLNSVNLSSEIISFSLAY 606
           MLN VN+S+ + SFS++Y
Sbjct: 6   MLNDVNISAILDSFSVSY 23


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 553 MLNSVNLSSEIISFSLAY 606
           MLN VN+S+ + SFS++Y
Sbjct: 6   MLNDVNISAILDSFSVSY 23


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 305 GADASKPVSLSPTPRSQLEAATTTLYPNMSM-ATATT 198
           GA A+   +++ T  +     TTT  PN +  A+ATT
Sbjct: 652 GAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATT 688


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 243 HYHAVPKHVYGHRNNDNTTHS 181
           H HA P H + H    +  HS
Sbjct: 425 HIHATPHHHHSHAATPHHQHS 445


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 246  GHYHAVPKHVYGHRNNDNTTHSQQC 172
            G++H V KH   HR     T  + C
Sbjct: 1678 GYHHNVNKHCTIHRTQVKETDDKIC 1702


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,721
Number of Sequences: 438
Number of extensions: 4565
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)