Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2g19
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    30   0.41 
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   6.7  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    25   8.9  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   8.9  

>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 272 SEINENHEPGKKETDVVAVGKRIIIMLYVTE*NLANFILRV*LNM 406
           S INE H+PG  E DV  V + I+  L+  +     F++ + +++
Sbjct: 129 SSINEEHKPGTNEIDVPKVIQNILDALHEEKDEQGRFLIDIFIDL 173


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 429 PILLYNYTIFNYTRSIKLAKF-HSVTYNIIIILFPTATTSVSFLPGSWFSLISLL 268
           P+ +  YT+F   ++  L  + H+V   +I+I+F  AT S     GS   L  +L
Sbjct: 173 PVGVIIYTMFGGIKATFLTDYIHTVIILVILIMFSLATYSADKKIGSPGKLYDML 227


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -2

Query: 408 TIFNYTRSIKLAKFHSVTYNIIIILFPTATTSVSFLPGSWFSLISLLPAPS 256
           T F Y  S   +   S +Y   +    TAT S      +W +  SL P PS
Sbjct: 313 TDFPYLSSRYASVIPSASYESTMSATLTATMSCQATNSAWMAATSLPPTPS 363


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 21/94 (22%), Positives = 41/94 (43%)
 Frame = -3

Query: 671 TLQTETHYCFTTEIGKVVITTRADSQKVLSPVSVYVSSNVTMSVFKYQVQLLFFLNKILN 492
           T Q   H C T  +  +   +    + VL P++     ++   V  Y VQL   +  + +
Sbjct: 278 TYQKALHRCRTLNLILISFLSTKTDKIVLLPINAL--KDLIQRV--YTVQLSLPVKSVES 333

Query: 491 TSPLLIFMTKE*HIIVIKKINLFYYIIIPYLTIL 390
           +   L+FM       ++ ++ L  +++IP   IL
Sbjct: 334 SVQALLFMVLPHLHTLVNELTLKLFVVIPPAIIL 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,331
Number of Sequences: 5004
Number of extensions: 49598
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)