Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2g19
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm rece...    32   0.51 
AC006607-7|AAL00855.1|  789|Caenorhabditis elegans Hypothetical ...    31   0.68 
AC006619-1|AAK68255.1|  241|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical p...    28   6.3  
AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical...    28   6.3  
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    28   6.3  

>AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 84 protein.
          Length = 338

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 471 HDEGITYYCDKKN*PILLYNYTIFNYTRSIKLAKFHSVTYNIIIILFPTATTSVS 307
           H  GI Y     +  I L    IF    S    K+  + YN+++I++ TATT+ +
Sbjct: 12  HTSGIKYIISLAS-EIFLLLLIIFKTRASFGPYKYLMIVYNVVLIMYSTATTNAN 65


>AC006607-7|AAL00855.1|  789|Caenorhabditis elegans Hypothetical
           protein C09E7.9 protein.
          Length = 789

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 502 LFKKKSSCTWYLNTDMVTLLETYTLTGDRTFCESARVVITTL 627
           +F+K    TW+L TD V +LET     +RT C      + T+
Sbjct: 61  IFQKVKHDTWHLVTDYVNILETRLKPFERTPCFITNTALETI 102


>AC006619-1|AAK68255.1|  241|Caenorhabditis elegans Hypothetical
           protein C46C11.3 protein.
          Length = 241

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -1

Query: 304 LAWFVVLINLAAAGSFLWYSRKRKGDKAATDELAMADEPTIIGR 173
           LA   +  +L A  +F   S K+KG+ AAT EL + D    IGR
Sbjct: 198 LAQGAIATSLIACLAFALGSHKQKGEHAATAELEIEDREYHIGR 241


>Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = -3

Query: 578 VSVYVSSNVTMSVFKYQVQLLFFLNKILNTSPLLIFMTKE*HIIVIKKINLFYYIIIPYL 399
           VS+Y SSNV ++  ++ +Q  FF  + L+T  +         +    KI   YYI++ YL
Sbjct: 70  VSIYESSNVILTTSQF-LQSFFFHVQSLSTIVICTHRLSAAKLENANKIWNRYYILV-YL 127

Query: 398 TILV 387
            ILV
Sbjct: 128 GILV 131


>AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = -3

Query: 578 VSVYVSSNVTMSVFKYQVQLLFFLNKILNTSPLLIFMTKE*HIIVIKKINLFYYIIIPYL 399
           VS+Y SSNV ++  ++ +Q  FF  + L+T  +         +    KI   YYI++ YL
Sbjct: 70  VSIYESSNVILTTSQF-LQSFFFHVQSLSTIVICTHRLSAAKLENANKIWNRYYILV-YL 127

Query: 398 TILV 387
            ILV
Sbjct: 128 GILV 131


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 597 TKGPITSKCI--RLEQCDHVSVQIPSAATF 514
           TK PIT KC+  R ++C  V + +PS   F
Sbjct: 53  TKTPITQKCVFCRFQKCIQVGMTLPSYLHF 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,026
Number of Sequences: 27780
Number of extensions: 272599
Number of successful extensions: 662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)