Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2g17
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    64   1e-11
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   3.6  
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    25   6.3  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    24   8.4  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   8.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 28/48 (58%), Positives = 33/48 (68%)
 Frame = +2

Query: 38  PLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 181
           P   GL  N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 404 PKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 46  YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 174
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 2   VFAIIGGFIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHF 136
           V    G  I  +P   G+++   ILK+ F   F    + FF  HF
Sbjct: 131 VIVACGAGIRSFPQKRGVNMLYAILKLTFVNAFAIPLLMFFRSHF 175


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 70  YTKNSIFYNIYWSKYNIFSTTFFR 141
           YT  S F    W  Y+IF + FF+
Sbjct: 256 YTAGSWFMLFIWIVYSIFLSIFFK 279


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 76  KNSIFYNI--YWSKYNIFSTTFFRFSWNTSTIFRLSRLIY 189
           KNS+  ++  Y++K   +  +F  +    +TIF+ S L+Y
Sbjct: 27  KNSVIPDVIDYYNKGRQYYQSFVVYKATANTIFQFSYLLY 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,057
Number of Sequences: 5004
Number of extensions: 24282
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)