Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2g10
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    41   2e-04
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    32   0.081
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    32   0.11 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    30   0.43 
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    29   0.99 
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    28   1.3  
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    27   2.3  
SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.3  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   3.0  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    27   3.0  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   4.0  
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    27   4.0  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   5.3  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   7.0  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   9.3  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   9.3  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   9.3  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    25   9.3  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    25   9.3  

>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +3

Query: 300 VKFTVHTKTTLPEFQKSEFIVVRQHEEFVWLHDRYEENEEYAGYIIPPAP 449
           V + + T++ LP F+  +F V R++++F  LH+    + +Y GY IPP P
Sbjct: 21  VSYEIETESDLPVFEDKKFSVRRRYKDFEMLHNIL--SHDYNGYAIPPLP 68


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 32.3 bits (70), Expect = 0.081
 Identities = 16/41 (39%), Positives = 28/41 (68%)
 Frame = +3

Query: 552 EDEYLATFKKTVAMHEVFLQRLAAHPVFRRDSHLRVFLEYE 674
           +DE++   ++  A+ EV L++++AHPV R D   ++FLE E
Sbjct: 277 DDEFIE--QRRAAL-EVMLRKISAHPVLRDDYSFKLFLEAE 314


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 32/128 (25%), Positives = 53/128 (41%)
 Frame = +3

Query: 285 SEKEKVKFTVHTKTTLPEFQKSEFIVVRQHEEFVWLHDRYEENEEYAGYIIPPAPPRPDF 464
           S    V + + TKT L  F ++E  V R+  +FV L +      E    ++PP P     
Sbjct: 32  SRDTHVSYLIITKTNLSIFTRAECKVRRRFSDFVKLQEILSRMNE--DCVVPPLP----- 84

Query: 465 DASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQRLAAHPVFRRD 644
             ++ KL+ +   +G    + F+  + +L + Y+               R A HPV  + 
Sbjct: 85  --AKHKLEYI---KGGRFSDNFINRRAKLLNRYIT--------------RCALHPVLHQS 125

Query: 645 SHLRVFLE 668
            H   FLE
Sbjct: 126 PHFIAFLE 133


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +3

Query: 459 DFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQRLAAHPVFR 638
           D+  S   L R  +GE      ++  +   L D     +     + E+ L+ L  HPV R
Sbjct: 72  DYLQSEYNLNRYNDGESIAASRDYQSL---LRDNGSGVYSDEEEITEMMLEELNIHPVLR 128

Query: 639 RDS 647
           R+S
Sbjct: 129 RES 131


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -2

Query: 178 ATGTVDKGSCDESSTQSCIIL*KKGIVRFKIRILKEFS*FKHKTRKSESTERNKLLV 8
           A G V  G CDES+ Q  ++    G   +  R   + S FK   +K+ ST R  L V
Sbjct: 75  ALGGVVSGVCDESAIQFHMLNRSNGPAVWSPRAQMDRSVFKKNMQKTISTYRKNLQV 131


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/94 (22%), Positives = 41/94 (43%)
 Frame = +3

Query: 129 DCVEDSSQDPLSTVPVADPAPATMDTKVEKKKPNENVSLADNSLLVDISDALSEKEKVKF 308
           D  ED + D    +P A P+ +T       +   E++ L+  S    +S   S       
Sbjct: 253 DIKEDETFDSKVEIPEAAPSSST-------ESDEESIPLSYQSKRRRVSARASSSASSSS 305

Query: 309 TVHTKTTLPEFQKSEFIVVRQHEEFVWLHDRYEE 410
               K+ +P  +++ + ++RQH E   + ++ EE
Sbjct: 306 RTQAKS-IPSHERTHYRLIRQHPELEHVWEKLEE 338


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +3

Query: 408 ENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLA 569
           ++ E   Y +P APP PD    +  LQ +    G+      + +++ +   +L+
Sbjct: 152 DHSEAVEYTVPTAPPIPDLRFQQSYLQSIQRANGSAFLVALITLRDHVLYPFLS 205


>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 692 LGTEILFVLQEYPEMRIPAEDRMSSQALEEYFV 594
           + T++  ++  YPE  +P E    ++AL +Y V
Sbjct: 91  VATKLCILVSHYPETTLPGEAAKITEALADYLV 123


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 590 DARSIPPAPGCSSCLPQGFSSQGI---PGVRTG 679
           D RS+PP PG S+  P+   S  I   PG+  G
Sbjct: 416 DTRSVPPPPGFSTNAPKAVKSPEISAPPGLYRG 448


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +3

Query: 66  ENSFNILILNRTIPFFYNMMQDCVEDSSQDPLSTVPVADPAPATMDTKVEKKKPNENVSL 245
           ENS   +      P   + M D  +++S DP          P+T + ++EK++P++   +
Sbjct: 136 ENSLTNVNSIHAQPTTISDMIDLTDETSYDPRKQKFEQGKNPSTTNAEIEKEEPSKKQVV 195

Query: 246 ADNSLLVD 269
             +  L D
Sbjct: 196 PSSQRLAD 203


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 477 EKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQRLAAHP 629
           E++Q+  E  GAL  EE       L  +YL  F K   +HE  +  L   P
Sbjct: 577 EEIQKEAEDSGALMEEELRGKFINLRCKYL--FSKLTTLHEKEIDTLLTIP 625


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +3

Query: 408 ENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTV 587
           E +EY    +  A    +   +REK     E  G ++R+E L+ +EEL       FK   
Sbjct: 79  EFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSG-VSRDELLRQQEELLSRARERFKNQN 137

Query: 588 AMHE 599
             H+
Sbjct: 138 IAHD 141


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 528 FLKMKEELEDEYLATFKKTVAMHEVFLQRL 617
           FL   EELE++Y   FKK    +  F Q L
Sbjct: 472 FLVTPEELEEQYTDFFKKLKEKYGEFFQNL 501


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 671 VLQEYPEMRIPAED 630
           VL+EYP ++IP+ED
Sbjct: 161 VLEEYPYLKIPSED 174


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 456 PDFDA-SREKLQRLGEGEGALTREEFLKMKEELEDE 560
           P  DA S++K  R+ E      REE +  K+  EDE
Sbjct: 18  PKHDAVSKQKEYRIEEKTNEAQREEIITWKDNREDE 53


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +3

Query: 117 NMMQDCVEDSSQDPLSTVPVADPAPATMDTKVEKKKPNENVSLADNSLLV---DISDALS 287
           N ++  V+D  +DPL  +P + P  A   T+++K      +  A   LLV     + A +
Sbjct: 162 NYIESTVDDFPKDPLPPIP-SSPKCAPDPTQLQKAA--YYLKNAKAPLLVVGKGAAYACA 218

Query: 288 EKEKVKFTVHT 320
           EK+ ++F  HT
Sbjct: 219 EKQLLEFVEHT 229


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 584 GGDARSIPPAPGCSSCLPQG 643
           GG   +IPP   C SC+  G
Sbjct: 284 GGTGTTIPPNSACRSCMGSG 303


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 71  FLQYSNFKPYNPFLLQYDAGL 133
           F +YS +K Y+PF  Q D+ L
Sbjct: 124 FARYSEWKAYDPFFQQKDSTL 144


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 26/85 (30%), Positives = 36/85 (42%)
 Frame = +3

Query: 438 PPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQRL 617
           PP P    F+    KL  L     A+   E L +K+EL+  YLA      A+  +    +
Sbjct: 189 PPFPMVQGFEFWISKLPYL-----AMQTNEHLAVKDELDSLYLAQAALLFAIKALKPDGI 243

Query: 618 AAHPVFRRDSHLRVFLEYEQDLCAK 692
               V    SHLR F E +  +C K
Sbjct: 244 FLCKVL-ESSHLRSFAE-DLSMCFK 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,777
Number of Sequences: 5004
Number of extensions: 65117
Number of successful extensions: 242
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)