Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2g10
(782 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.45
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.45
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.45
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.45
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.45
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.45
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.45
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.45
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.79
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 25 1.1
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 23 4.2
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 23 4.2
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 23 4.2
AB023025-1|BAA74592.1| 133|Apis mellifera actin protein. 22 5.6
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 22 7.4
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 21 9.8
AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II ... 21 9.8
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.45
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 72 SFNILILNRTIPFFYNMMQDCVEDSSQDPLS-TVP 173
+F I I RT+ +F+N++ CV SS L T+P
Sbjct: 185 TFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLP 219
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.45
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 72 SFNILILNRTIPFFYNMMQDCVEDSSQDPLS-TVP 173
+F I I RT+ +F+N++ CV SS L T+P
Sbjct: 185 TFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLP 219
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.45
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 72 SFNILILNRTIPFFYNMMQDCVEDSSQDPLS-TVP 173
+F I I RT+ +F+N++ CV SS L T+P
Sbjct: 185 TFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLP 219
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.45
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 72 SFNILILNRTIPFFYNMMQDCVEDSSQDPLS-TVP 173
+F I I RT+ +F+N++ CV SS L T+P
Sbjct: 185 TFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLP 219
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.45
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 72 SFNILILNRTIPFFYNMMQDCVEDSSQDPLS-TVP 173
+F I I RT+ +F+N++ CV SS L T+P
Sbjct: 185 TFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLP 219
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.45
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 72 SFNILILNRTIPFFYNMMQDCVEDSSQDPLS-TVP 173
+F I I RT+ +F+N++ CV SS L T+P
Sbjct: 185 TFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLP 219
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.45
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 72 SFNILILNRTIPFFYNMMQDCVEDSSQDPLS-TVP 173
+F I I RT+ +F+N++ CV SS L T+P
Sbjct: 253 TFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLP 287
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.45
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 72 SFNILILNRTIPFFYNMMQDCVEDSSQDPLS-TVP 173
+F I I RT+ +F+N++ CV SS L T+P
Sbjct: 253 TFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLP 287
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.0 bits (52), Expect = 0.79
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 72 SFNILILNRTIPFFYNMMQDCVEDSSQDPLS-TVP 173
+F ++I RT+ +F+N++ CV +S L T+P
Sbjct: 222 TFVVIIRRRTLYYFFNLIVPCVLIASMAVLGFTLP 256
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 24.6 bits (51), Expect = 1.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 599 SIPPAPGCSSCLPQGFSSQGIPGV 670
SIPP P + +PQ +SQ IP +
Sbjct: 763 SIPPPPSAQN-VPQNTNSQAIPRI 785
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 22.6 bits (46), Expect = 4.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 460 ISMPPARSYSDWARGKEP 513
IS PP ++DW EP
Sbjct: 167 ISSPPLAGWNDWPEELEP 184
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 22.6 bits (46), Expect = 4.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 460 ISMPPARSYSDWARGKEP 513
IS PP ++DW EP
Sbjct: 167 ISSPPLAGWNDWPEELEP 184
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 22.6 bits (46), Expect = 4.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 460 ISMPPARSYSDWARGKEP 513
IS PP ++DW EP
Sbjct: 167 ISSPPLAGWNDWPEELEP 184
>AB023025-1|BAA74592.1| 133|Apis mellifera actin protein.
Length = 133
Score = 22.2 bits (45), Expect = 5.6
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +1
Query: 391 YMTVMKRMKNMLVI*SLQHLLVLISMPPARSYSDWARG 504
Y + RM+ + + + + I PP + YS W G
Sbjct: 81 YPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGG 118
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 21.8 bits (44), Expect = 7.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 42 FLVLCLNYENSFNILILNRTIPFFYNMMQDCVEDSSQDPLSTVP 173
F + + EN FNI R + M+ +DS ++ LS P
Sbjct: 9 FEITDYDLENEFNINRPRRKLSKKQQMLGIWADDSDEEELSARP 52
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 21.4 bits (43), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = +2
Query: 647 SSQGIPG----VRTGSLCQAKRQDGPHWW 721
SS IPG +RT S + DGP+ W
Sbjct: 53 SSLIIPGNVNMIRTHSTXPXEEDDGPYKW 81
>AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II
protein.
Length = 190
Score = 21.4 bits (43), Expect = 9.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 453 EEVLEGLYNQHILHSLHNGHVARQTLHADVLL*TLIFGTPVKL 325
+++LE +++ H HNG V R ++LL + G VKL
Sbjct: 16 QQILESVHHCH-----HNGVVHRDLKPENLLLASKAKGAAVKL 53
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,331
Number of Sequences: 438
Number of extensions: 5027
Number of successful extensions: 21
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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