Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2g09
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 247 1e-66
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 66 6e-12
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 65 1e-11
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 62 1e-10
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 58 1e-09
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 52 1e-07
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 50 3e-07
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 49 7e-07
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 46 8e-06
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 31 0.19
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po... 29 0.78
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 28 1.4
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 28 1.4
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 28 1.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.8
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 27 2.4
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 27 3.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 26 5.5
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 26 5.5
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 7.2
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 247 bits (605), Expect = 1e-66
Identities = 121/202 (59%), Positives = 158/202 (78%), Gaps = 1/202 (0%)
Frame = +1
Query: 136 RLP-RVVRQTVSLHKSYQLSRFYAKDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVI 312
RLP R+ + + + R YAKD++FG D RA +L GVD LA AV+VT+GPKGRNV+
Sbjct: 11 RLPLRIAGRRIPGRFAVPQVRTYAKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVL 70
Query: 313 LEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAI 492
++Q +GSPKITKDGVTVA+ V LKDKF+N+GA+LVQ+VA+ TNE AGDGTTTATVL RAI
Sbjct: 71 IDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAI 130
Query: 493 AKEGFEKISKGANPIEIRRGVMLAVDAVKEKLKGMSKPVTTPEEIAQVATISANGDTAIG 672
E ++ G NP+++RRG+ LAVD V E L+ + +TT EEI+QVATISANGDT IG
Sbjct: 131 FSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQANKRDITTSEEISQVATISANGDTHIG 190
Query: 673 KLIADAMKKVGRDGVITVKDGK 738
+L+A AM++VG++GVITVK+G+
Sbjct: 191 ELLAKAMERVGKEGVITVKEGR 212
Score = 48.8 bits (111), Expect = 9e-07
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +3
Query: 735 KTLTDELEIIEGMKFDRGYISPYF 806
+T++DELE+ EGMKFDRGYISPYF
Sbjct: 212 RTISDELEVTEGMKFDRGYISPYF 235
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 66.1 bits (154), Expect = 6e-12
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 3/187 (1%)
Frame = +1
Query: 220 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQN 399
G D + +A+ V ++GP+G + IL G +T DG T+ +E++ +
Sbjct: 32 GIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQI-- 89
Query: 400 IGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVK 579
AKL+ ++ + ++E GDGTT VLA A+ ++ I KG +PI I G A
Sbjct: 90 --AKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAV 147
Query: 580 EKLKGMSKPVT-TPEEIAQV--ATISANGDTAIGKLIADAMKKVGRDGVITVKDGKPSPT 750
+ L +S V +PE + + ++ G + K D + D V++V D +
Sbjct: 148 KHLDAISDVVDFSPENTTNLFRSAKTSLGSKVVSK-AHDHFANIAVDAVLSVADLQRKDV 206
Query: 751 SLKSLRV 771
+ ++V
Sbjct: 207 DFELIKV 213
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 64.9 bits (151), Expect = 1e-11
Identities = 48/187 (25%), Positives = 94/187 (50%), Gaps = 5/187 (2%)
Frame = +1
Query: 226 DVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIG 405
+VR + +ADA+ ++GPKG + +++ G +T DG T+ K + + +
Sbjct: 19 EVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV----LHPA 74
Query: 406 AKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEI----RRGVMLAVDA 573
AK++ +++ + EAGDGTT+ +LA ++ + + KG +P I +R VD
Sbjct: 75 AKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDC 134
Query: 574 VKEKLKGMSKPVTTPEEIAQVATISANGDTAIGKLIADAMKKVGRDGVITVKDGK-PSPT 750
+KE ++ ++ E + + AT S N + I ++ + + D V+ V D + +
Sbjct: 135 MKE--NALAIELSDRESLLRAATTSLN--SKIVSQYSNLLAPIAVDAVLKVIDPRVATNV 190
Query: 751 SLKSLRV 771
LK +R+
Sbjct: 191 DLKDIRI 197
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 61.7 bits (143), Expect = 1e-10
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Frame = +1
Query: 220 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQ-SWGSPKITKDGVTVAKGVELKDKFQ 396
G + R G + D V T+GPKG + IL+ S G +T DG T+ K + L
Sbjct: 18 GENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIAL----D 73
Query: 397 NIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAV 576
N AK++ N++ ++E GDGTT+ V A + ++ ++ +P I G +A
Sbjct: 74 NAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTA 133
Query: 577 KEKLKGMS 600
+ L+ S
Sbjct: 134 IDALRASS 141
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 58.0 bits (134), Expect = 1e-09
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 3/192 (1%)
Frame = +1
Query: 220 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQN 399
G DVR + +A+ V ++GP G + +L G +T DG T+ + L D
Sbjct: 19 GEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATI---LSLLDVEHP 75
Query: 400 IGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAV-DAV 576
G LV+ +A ++E GDGTT+ ++A + + E + +P I G LA+ +AV
Sbjct: 76 AGKVLVE-LAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 577 KEKLKGMSKPVTT--PEEIAQVATISANGDTAIGKLIADAMKKVGRDGVITVKDGKPSPT 750
K +S V + E + VA S + IG +D + D +++VK
Sbjct: 135 KFMTDVLSCSVDSLGKESLINVAKTSMS-SKIIGN-DSDFFSTMAVDAMLSVKTSNSKGE 192
Query: 751 SLKSLRV*NLIE 786
+ ++ N+++
Sbjct: 193 TRYPVKAVNILK 204
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 51.6 bits (118), Expect = 1e-07
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Frame = +1
Query: 262 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTN 441
L D + +GP G +L G+ K+TKDG + +++ QN A + A +
Sbjct: 28 LQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQI----QNPTASCIAKAATAQD 83
Query: 442 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLKGMSKPVTTPE 621
+ GDGTT+ +L + K+ I +G +P I G LA + L
Sbjct: 84 DATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFEVDR 143
Query: 622 EI-AQVATISANGDTAIGKLIADAMKKVGRDGVITVK 729
E+ VA S + T I + +++ D ++T++
Sbjct: 144 EVLLNVAKTSLS--TKISSKVVESLAPAVVDAILTIR 178
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 50.4 bits (115), Expect = 3e-07
Identities = 30/108 (27%), Positives = 50/108 (46%)
Frame = +1
Query: 268 DAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEE 447
D + T+GP G + ++ G I+ DG T+ K +++ AK + ++A + E
Sbjct: 38 DTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHP----AAKTLVDIARAQDAE 93
Query: 448 AGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLK 591
GDGTT+ V A + +E + G + I RG A K+K
Sbjct: 94 VGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIK 141
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 49.2 bits (112), Expect = 7e-07
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 1/148 (0%)
Frame = +1
Query: 244 LQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQN 423
+Q +AD + +GP+ +L GS +T DG + + +E+ AK +
Sbjct: 25 IQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHP----AAKSMIE 80
Query: 424 VANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLKGMSK 603
+A +EE GDGTT+ +LA I + + +P+ + R A++ + ++
Sbjct: 81 LARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITL 140
Query: 604 PVTTPEEIAQVATISANGDTAIG-KLIA 684
PV + I T IG KL+A
Sbjct: 141 PVNVDDNAEMFRLIR----TCIGTKLVA 164
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 45.6 bits (103), Expect = 8e-06
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 5/175 (2%)
Frame = +1
Query: 262 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTN 441
L++ ++GP G+N I+ +T D T+ + +E+ AKLV +
Sbjct: 38 LSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHP----AAKLVVDATQQQE 93
Query: 442 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVDAVKEKLKGM-SKPVTTP 618
E GD V + + I G P+EI +G +A+ E L+ + + + T
Sbjct: 94 NELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICADKIETV 153
Query: 619 EE----IAQVATISANGDTAIGKLIADAMKKVGRDGVITVKDGKPSPTSLKSLRV 771
E I + T ++ ++D + K ++TV PS ++ ++RV
Sbjct: 154 ESEKELIKAIRTCISSKQYGNEDFLSDLVAK----AILTVLPKDPSKFNVDNIRV 204
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 31.1 bits (67), Expect = 0.19
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +1
Query: 301 RNVILEQSWGSPKITKDGVTVAK-GVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATV 477
R VI ++ S +T G T G+ELKD+F+ +G K++ T + T +
Sbjct: 542 RKVIKQERPDSIYVTFGGQTALNVGIELKDEFEQLGVKVL-----GTPIDTIITTEDREL 596
Query: 478 LARAIAKEGFEKISKGANPIEIRRGVMLAVD 570
ARA+ E EK +K A+ I + ++ D
Sbjct: 597 FARAM-DEINEKCAKSASASSIEEAIKVSKD 626
>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 29.1 bits (62), Expect = 0.78
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 800 W*NVTSIKFHTLNDFKLVGEGFPSF 726
W N+ +I+ HTLN + LV G SF
Sbjct: 55 WHNLINIRLHTLNTYPLVHHGVISF 79
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = -1
Query: 731 SFTVITPSLPTFFIASAMSLPIAVSPLADMVATCAISSGVVTGFDIPLSFSLTAS 567
S T +T S P+ ++S S+P S ++ V+T + +S +GF LS + T S
Sbjct: 132 SSTTLTSSSPSA-VSSTTSIPSISSTISSSVSTSSFTSLSSSGFSTVLSSTNTTS 185
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 732 WKTLTDELEIIEGMKFDRGYISPYF 806
W + + L+ I+GM FD +ISP F
Sbjct: 68 WNGIRNHLDYIQGMGFDAIWISPIF 92
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 321 LFQNNVSTFWTHCNGYGIS*DVNALQHESSYISAKPHIFGI 199
++ N +S T +G+GI +++ + E SAK H+FGI
Sbjct: 225 IYPNTLSVLRTRASGFGIKIELDNITPELITKSAK-HVFGI 264
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -1
Query: 746 GEGFPSFTVITPSLPTFFIASAMSLPIAVSPLADMVATCAISSGVVTGFDIPLSFSLT 573
G G+PS++ T + T I ++ + I + A + I++G +T D P +F+ T
Sbjct: 910 GSGYPSYSNTTQGMNTTSIWNSSNSTIVSNVTATITGNVTITTGDLTTID-PTTFTST 966
Score = 26.6 bits (56), Expect = 4.1
Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 2/170 (1%)
Frame = -1
Query: 710 SLPTFFIASAMSLPIAVSPLADMVATCAISSGVVTGFDIPLSF--SLTASTASITPLLIS 537
S P + S + + +PL+ + + A S+ + PLS S TA++AS TPL
Sbjct: 305 STPLTSVNSTTTTSASSTPLSSV--SSANSTTATSTSSTPLSSVNSTTATSASSTPLTSV 362
Query: 536 IGLAPFDIFSKPSFAIARXXXXXXXXXXXXXXXXXXXTFCTNLAPMFWNLSLSSTPLATV 357
S P ++ T ++ AP + N S S P ++V
Sbjct: 363 NSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY-NTS-SVLPTSSV 420
Query: 356 TPSFVIFGDPQDCSRITFLPFGPIVTATASARMSTPCSMRALTSAPNLTS 207
+ + + + + + P + + TA++ STP S T+A + +S
Sbjct: 421 SSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASS 470
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 139 LPRVVRQTVSLHKSYQLSRFYAKDVRFGADVRALMLQGVDILADAV 276
+P V++ + ++ Y+L+ F+ R+ V LQGV + AD V
Sbjct: 140 VPSVLKAPIFIY--YRLTNFFQNHRRYAKSVDEKQLQGVALTADEV 183
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 687 CNEEGR*GWSNHSERWKTLTDELEIIEGMKFDRGYISP 800
CN E R W+ + D+L+ I+GM F +ISP
Sbjct: 52 CNPEDR---EYCGGNWRGIIDKLDYIQGMGFTAIWISP 86
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = -1
Query: 716 TPSLPTFFIASAMSLPIAVSPLADMVATCAISSGVVT--GFDIPLSFSLTASTASI 555
TPS + I+S+ + + S L+ ++T ISS + T IP S +L +S++S+
Sbjct: 629 TPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSL 684
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 656 PLADMVATCAISSGVVTGFDIPLSFSLTASTASITPLLISIGLAPF 519
PL D T + S ++TG L+ + T S+TP L++ LA +
Sbjct: 332 PLFDAFKTVSDSLQILTGVVSTLTINPTKIAESLTPDLLATDLAEY 377
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 223 RQTSHLWHKILKVDMIYGEKQFDEQHEVDATFLKIVLILAVF 98
RQT+ +W + V F H +ATF ++L + F
Sbjct: 166 RQTNIVWMVFIAVTYFASNMSFFNPHLAEATFADVLLTIISF 207
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.8 bits (54), Expect = 7.2
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = -1
Query: 416 TNLAPMFWNLSLSSTPLATVTPSFVIFGD--PQDCSR-----ITF-LPFGPIVTATASAR 261
T L P F NL SS+ T F+ D ++ SR I F + + P+V+
Sbjct: 129 TLLPPTFHNLIPSSSSYETAVAEFLHMEDLLQENVSRELECQICFGMLYDPVVSPCGHT- 187
Query: 260 MSTPCSMRALTSAP 219
PC M+ALT +P
Sbjct: 188 FCGPCLMQALTQSP 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,357
Number of Sequences: 5004
Number of extensions: 59323
Number of successful extensions: 214
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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