Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2g03
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    28   1.2  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    27   2.2  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    27   3.8  
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    26   5.0  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   6.6  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   6.6  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   8.7  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   8.7  

>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 590 PTGFGTLIQEGGSPIKYTKDGKI 658
           PTG   ++ +G   IK TKDGK+
Sbjct: 38  PTGTTKMLVDGAGAIKLTKDGKV 60


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 431 SKQIKRMISSYVGENAEFERQFLSGELE 514
           S++I  MIS+ VG NAE +   L+ EL+
Sbjct: 137 SEEISTMISTPVGLNAEIDEDELANELD 164


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 561 PARILSASVPCGVNSTSNSPLKNCLSNSAFS-PT 463
           PA + S SVP G  +  N+P ++ +S  +FS PT
Sbjct: 31  PAVVSSPSVPEGTYTVLNNPKQSTVSRKSFSAPT 64


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 656 IDIPSSARFVQQFNGNNYVMEE 721
           ++IP+ AR  QQF   N +ME+
Sbjct: 120 MNIPAMARITQQFERENEIMEQ 141


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +2

Query: 254  AQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKS 433
            A   +   + G+KL+VGG G  G    L     I  V +  V     GV   G  I+  +
Sbjct: 1208 ADNFLHAANKGAKLVVGGVGAAG-GLALAGVTTIGSVGSKAVTGVADGVTGTGKHIISGA 1266

Query: 434  KQIKRM 451
            K I +M
Sbjct: 1267 KGISKM 1272


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 356 KKVSALTVVSNNAGVEDFGLG 418
           K  S L+  + NAGV DFGLG
Sbjct: 764 KSQSMLSANNLNAGVNDFGLG 784


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 314 LCGIPENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAE 481
           L  + EN+  + + +  ++L  V+N+    D GLG  L +  I + I++ V  N +
Sbjct: 342 LSDVDENISTSSSPRSPASLAPVNNSERSYDSGLGESLNNMHIGKSIATAVPVNTK 397


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 567 APPARILSASVPCGVNSTSNSPLKNCLSNSAFSPT 463
           A P+ + S S+P   ++TSN    N   +S FSPT
Sbjct: 246 ANPSTLFS-SIPSSRHTTSNHFPSNSAQSSLFSPT 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,595
Number of Sequences: 5004
Number of extensions: 59854
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)