Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2g03
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198... 31 0.98
03_02_0787 + 11180794-11180958,11181051-11181230,11181396-111816... 29 3.9
03_06_0593 + 34946665-34946952,34947484-34947798,34948246-349483... 29 5.2
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 29 5.2
07_01_0457 - 3468419-3468585,3469674-3469842,3470339-3470384,347... 28 6.9
06_03_0778 - 24523780-24526353 28 6.9
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 28 9.1
11_06_0390 - 23060034-23060399,23060486-23060573,23061767-230618... 28 9.1
07_03_0958 + 22881718-22881999,22882114-22883880 28 9.1
07_03_0758 - 21292205-21293329 28 9.1
>01_01_0238 -
1976645-1977561,1977649-1977909,1978243-1978275,
1980556-1981345
Length = 666
Score = 31.1 bits (67), Expect = 0.98
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Frame = +2
Query: 245 YASAQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNN-AGVEDFG--L 415
Y E SD +L VGGFG + + +++ N V+ + N+ VE F +
Sbjct: 335 YEELDEATDGFSDARELGVGGFGT--VYKGILR--NGDTVAVKRLYKNSYKSVEQFQNEV 390
Query: 416 GILLKSKQIKRMISSYVGENAEFERQFLSGELEVELTPQGTLAERIRAGGAGIPAFFT-P 592
GIL + + +++ + + R L L E P GTLA+ + G A + P
Sbjct: 391 GILSRLRH-PNLVTLFGCTSQTNSRDLL---LVYEFVPNGTLADHLHGGAAARSSSLDWP 446
Query: 593 TGFGTLIQEGGSPIKY 640
T G + E S ++Y
Sbjct: 447 TRLGIAV-ETASALEY 461
>03_02_0787 +
11180794-11180958,11181051-11181230,11181396-11181611,
11181693-11181875,11182013-11182234,11182434-11182550,
11182682-11182825,11183198-11183299,11183762-11183830,
11184283-11184516
Length = 543
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +2
Query: 320 GIPENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEF 484
GIPE K + + A+T S +ED L +S +K SY+GE AEF
Sbjct: 472 GIPEPYEKLKEMTRGQAVTKDSIRQFIEDLDLPEAARSSLLKLTPHSYIGE-AEF 525
>03_06_0593 +
34946665-34946952,34947484-34947798,34948246-34948374,
34948774-34949169
Length = 375
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 473 NAEFERQFLSGELEVELTPQGTLAERIRAGGAGIPAFFTPTGFGTLIQEGGSPIKYTKDG 652
+A+ + + GE V+L+PQG AE IPA F G G +GG + T
Sbjct: 281 HAKAVAESMLGEANVKLSPQGMGAEDFGFYAQRIPAAFFGIGVG---NDGGGMAETTTKN 337
Query: 653 KIDIP 667
++ P
Sbjct: 338 QLHSP 342
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -3
Query: 651 PSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARIL-SASVPCGVNSTSNSPLKNCLSNSA 475
PS L PPS + PV A +PAP L ASVP V + + +++
Sbjct: 31 PSATVLPARPPSPPRASIPVSTSPAPLPAPAKPSLPGASVPIIVPQAPPASVSVPIASDG 90
Query: 474 FSP 466
F P
Sbjct: 91 FGP 93
>07_01_0457 -
3468419-3468585,3469674-3469842,3470339-3470384,
3470671-3470753,3471395-3471474,3472320-3472428,
3472667-3472735,3472874-3472924,3473059-3473184,
3473312-3473435,3473617-3473672,3473790-3473854,
3474438-3474513,3475050-3475108,3475275-3475365,
3475490-3475990
Length = 623
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Frame = +2
Query: 317 CGIP--ENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEFER 490
C +P E N ++ VV +A LL + +S+ VG + ER
Sbjct: 155 CTVPNMEGFTHCQNCDELKGSVVVGYDAFKAHLAQAALLSADAALPSVSTAVGFD---ER 211
Query: 491 QFLSGELEVELTPQGTLAERIRAGGAGIPA 580
L E+E++ P +R+RA A + A
Sbjct: 212 MLLHSEIEIKPNPHPERPDRLRAIAASLAA 241
>06_03_0778 - 24523780-24526353
Length = 857
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 350 NIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEFERQFLSGELEVE 520
+IK + L NN + DFG+ LL +Q+ +++ G ++L G+ ++
Sbjct: 654 DIKPDNILLDDKNNPKIADFGISRLLGDEQLHTTVTNVRGTRGYIAPEWLHGDRRID 710
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 350 NIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEFERQFLSGELEV 517
N+K + L + A V DFGL +LL + Y+ E + + LS E +V
Sbjct: 623 NVKSTNVLLDKNGVACVADFGLALLLSPAHAIARLGGYIAPEQE-DNKRLSQEADV 677
>11_06_0390 -
23060034-23060399,23060486-23060573,23061767-23061843,
23062971-23063057
Length = 205
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +2
Query: 128 IMTLNIRKLLDANYSKLV-----NSIGKIKSCATYATIIRKSKIYASA 256
I T I+K LD N ++ ++GK+ CA Y ++K+ +Y +A
Sbjct: 22 ITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAA 69
>07_03_0958 + 22881718-22881999,22882114-22883880
Length = 682
Score = 27.9 bits (59), Expect = 9.1
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Frame = +2
Query: 242 IYASAQEVVQDVSDGSKLLVGGFGLC--GI-PENLIKALNIKKVSALTVVSNNAGVEDFG 412
+Y+ D S+ KL GGFG G+ E + +K++S ++ G +++
Sbjct: 316 LYSQLATATNDFSEDGKLGEGGFGSVYRGVLSEPAGVHVAVKRISK----TSKQGRKEYA 371
Query: 413 LGILLKSKQIKRMISSYVGENAEFERQFLSGELEVELTPQGTLAERIRAGGAGIP 577
+ + S+ R + VG FL L EL P G+L + GGA +P
Sbjct: 372 SEVSIISRLRHRNLVQLVGW-CHGRGDFL---LVYELVPNGSLDAHLYGGGATLP 422
>07_03_0758 - 21292205-21293329
Length = 374
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 360 FFILRALIRFSGIPQSPKPP 301
FF R L++ SG+P SP PP
Sbjct: 277 FFSGRPLLQLSGLPPSPPPP 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,640,939
Number of Sequences: 37544
Number of extensions: 366835
Number of successful extensions: 987
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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