Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f24
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    81   1e-16
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.5  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   4.6  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.0  

>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 1/176 (0%)
 Frame = +3

Query: 153 KMNMMQAINNAMDITLKNNPTAVLFGEDVA-FGGVFRCALGLQEKYGKDRVFNTPLCEQX 329
           +M +  A+N+AM+  +K +    L GE+VA + G ++ + GL +K+G  RV +TP+ E  
Sbjct: 37  EMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMG 96

Query: 330 XXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGGEYDSGALTVRAPCSA 509
                            E    ++   A D IVN AA+  Y SGG   +  +  R P   
Sbjct: 97  FTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGG-IQACPIVFRGPNGP 155

Query: 510 VGHGGLYHSQSPEAFFAHXXXXXXXXXXXXIAAKGLLLACIRERDPCVFLEPKILY 677
                  HSQ    ++                A+GLL A IR+ +P V LE +ILY
Sbjct: 156 AAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILY 211


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 319 HSGVLKTRSLPYFSCNPKAHLKTPPNATSSPNNT 218
           +S VL   ++PY SC P     TP +A+S  + T
Sbjct: 147 NSTVLTFTAVPYDSCLPAPDRHTPSSASSRASET 180


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 301 TRSLPYFSCNPKAHLKTPPNATSSPNNTA 215
           T SLP  + N        PN  S+PNNTA
Sbjct: 123 TPSLPQSATNISFDSSAIPNVQSNPNNTA 151


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 654 TRRGPSRGCRPAADPWPLWAREAPPPGDRGHV--QRRPPDSGS 532
           +R  PS   RP + P  L   + PPP  R +V  Q  PP S S
Sbjct: 116 SRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPPSYS 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,925
Number of Sequences: 5004
Number of extensions: 59841
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)