Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f24
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical pr...   243   1e-64
AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical ...    95   6e-20
Z72514-2|CAA96675.2|  422|Caenorhabditis elegans Hypothetical pr...    31   1.1  
L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protei...    30   1.9  
U39667-6|AAC69011.2|  640|Caenorhabditis elegans Disorganized mu...    29   4.3  
AY095447-1|AAM23316.1|  640|Caenorhabditis elegans DIM-1(L) prot...    29   4.3  
AF047659-7|AAY86256.1|  302|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z50741-4|CAO82050.1|  190|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z92784-7|CAE54895.1|  808|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z92784-6|CAB07197.1|  805|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z81526-9|CAE54892.1|  808|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z81526-8|CAB04268.1|  805|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protei...    27   9.9  
M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.     27   9.9  

>Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical
           protein F27D4.5 protein.
          Length = 366

 Score =  243 bits (594), Expect = 1e-64
 Identities = 117/207 (56%), Positives = 141/207 (68%), Gaps = 3/207 (1%)
 Frame = +3

Query: 90  RMSSHFIYYPDKERPV---DGETTKMNMMQAINNAMDITLKNNPTAVLFGEDVAFGGVFR 260
           R  +HF + P    P    + E TKMN+MQ++N AM I ++ + +AVLFGEDVAFGGVFR
Sbjct: 20  RGKAHFTFQPSTTLPAGLENLEKTKMNLMQSVNEAMRIAMETDDSAVLFGEDVAFGGVFR 79

Query: 261 CALGLQEKYGKDRVFNTPLCEQXXXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAA 440
           C+L LQ+K+GKDRVFNTPLCEQ                  EIQF DYIFPA+DQ+VNEAA
Sbjct: 80  CSLDLQKKFGKDRVFNTPLCEQGIAGFGIGVAAAGATAIAEIQFGDYIFPAYDQLVNEAA 139

Query: 441 KARYRSGGEYDSGALTVRAPCSAVGHGGLYHSQSPEAFFAHXXXXXXXXXXXXIAAKGLL 620
           K RYRSG ++D G LTVR    AVGHG LYHSQSPEA F H            + AKGLL
Sbjct: 140 KFRYRSGNQFDCGKLTVRTTWGAVGHGALYHSQSPEANFTHTPGLKLVVPRGPVQAKGLL 199

Query: 621 LACIRERDPCVFLEPKILYRSAAEEVP 701
           L+CIR+ +PC+F EPKILYR A+E+VP
Sbjct: 200 LSCIRDPNPCIFFEPKILYRLASEDVP 226


>AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical
           protein C04C3.3 protein.
          Length = 352

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 59/175 (33%), Positives = 81/175 (46%), Gaps = 1/175 (0%)
 Frame = +3

Query: 156 MNMMQAINNAMDITLKNNPTAVLFGEDVA-FGGVFRCALGLQEKYGKDRVFNTPLCEQXX 332
           M +  A+N AMD  +K +    L GE+VA + G ++ + GL +K+G  RV +TP+ E   
Sbjct: 25  MTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGF 84

Query: 333 XXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGGEYDSGALTVRAPCSAV 512
                           E    ++   A DQI+N AAK  Y S G      +  R P  A 
Sbjct: 85  AGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPV-PIVFRGPNGAA 143

Query: 513 GHGGLYHSQSPEAFFAHXXXXXXXXXXXXIAAKGLLLACIRERDPCVFLEPKILY 677
                 HSQ   A++AH              AKGLL A IR+ +P VFLE +ILY
Sbjct: 144 AGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILY 198


>Z72514-2|CAA96675.2|  422|Caenorhabditis elegans Hypothetical
           protein T10B10.2 protein.
          Length = 422

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 411 AFDQIVNEAAKARYRSGGEYDSGALTVRAPCSAVG 515
           A+D +V++  KA YR+GG  +S    + APCS +G
Sbjct: 151 AYDLVVDQIHKAAYRNGGLGNS----IYAPCSKIG 181


>L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protein
           91 protein.
          Length = 278

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 491 PRALQCGRARRTLPLPESGGLLCTCPRSPGG 583
           P+ +  GRARR   LP+   L   CP  P G
Sbjct: 64  PKEMLLGRARRQAALPDCQALAKNCPPGPPG 94


>U39667-6|AAC69011.2|  640|Caenorhabditis elegans Disorganized
           muscle protein 1,isoform a protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 72  VNNYAKRMSSHFIYYPDKERPVDGETTKMNMMQAINNAMDITLKNNPTAVL 224
           +NN+ K  S     YP    P+ GE T +  +    N  ++  ++ PT  +
Sbjct: 25  INNHFKCTSKDLNEYPRTSTPLPGEITSIYSLPRSYNNQNLCTRSKPTTFI 75


>AY095447-1|AAM23316.1|  640|Caenorhabditis elegans DIM-1(L)
           protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 72  VNNYAKRMSSHFIYYPDKERPVDGETTKMNMMQAINNAMDITLKNNPTAVL 224
           +NN+ K  S     YP    P+ GE T +  +    N  ++  ++ PT  +
Sbjct: 25  INNHFKCTSKDLNEYPRTSTPLPGEITSIYSLPRSYNNQNLCTRSKPTTFI 75


>AF047659-7|AAY86256.1|  302|Caenorhabditis elegans Hypothetical
           protein K07H8.11 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 33  STKSIVFHKLIRNVNNYAKRMSSHFIYYPDK-ERPVDG 143
           S  S+++++L+R      K++   F YYP++ E+ +DG
Sbjct: 141 SYDSLLYNELLRLSTGIPKQLKISFFYYPERTEKVLDG 178


>Z50741-4|CAO82050.1|  190|Caenorhabditis elegans Hypothetical
           protein F55G7.4 protein.
          Length = 190

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 87  KRMSSHFIYYPDKERPVDGETTKMNMMQAINNAMDITLK 203
           +R+ +H++ YP      D + TK++ ++  N+A D++LK
Sbjct: 53  ERLINHYVSYPSPVHGSDVDETKVD-LKIKNHAFDLSLK 90


>Z92784-7|CAE54895.1|  808|Caenorhabditis elegans Hypothetical
           protein F31C3.2b protein.
          Length = 808

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 69  NVNNYAKRMSSHFIYY---PDKERPVDGETTK-MNMMQAINNAMDITLKNNPTAVL 224
           NVNN A   +SH I+Y    D   P      K   M+  INNA D  L +  T +L
Sbjct: 602 NVNNIAGIYNSHLIHYYSLTDARLPALALLVKHWAMVTGINNAQDGFLNSYTTILL 657


>Z92784-6|CAB07197.1|  805|Caenorhabditis elegans Hypothetical
           protein F31C3.2a protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 69  NVNNYAKRMSSHFIYY---PDKERPVDGETTK-MNMMQAINNAMDITLKNNPTAVL 224
           NVNN A   +SH I+Y    D   P      K   M+  INNA D  L +  T +L
Sbjct: 599 NVNNIAGIYNSHLIHYYSLTDARLPALALLVKHWAMVTGINNAQDGFLNSYTTILL 654


>Z81526-9|CAE54892.1|  808|Caenorhabditis elegans Hypothetical
           protein F31C3.2b protein.
          Length = 808

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 69  NVNNYAKRMSSHFIYY---PDKERPVDGETTK-MNMMQAINNAMDITLKNNPTAVL 224
           NVNN A   +SH I+Y    D   P      K   M+  INNA D  L +  T +L
Sbjct: 602 NVNNIAGIYNSHLIHYYSLTDARLPALALLVKHWAMVTGINNAQDGFLNSYTTILL 657


>Z81526-8|CAB04268.1|  805|Caenorhabditis elegans Hypothetical
           protein F31C3.2a protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 69  NVNNYAKRMSSHFIYY---PDKERPVDGETTK-MNMMQAINNAMDITLKNNPTAVL 224
           NVNN A   +SH I+Y    D   P      K   M+  INNA D  L +  T +L
Sbjct: 599 NVNNIAGIYNSHLIHYYSLTDARLPALALLVKHWAMVTGINNAQDGFLNSYTTILL 654


>U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protein
           14 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 545 GGLLCTCPRSPGGGASRAHSGQGSAAGLHPREGPLRVPG 661
           GG  CTC R P G A     G+  A G+    G +  PG
Sbjct: 147 GGGCCTCHRGPPGPA--GDGGRDGADGVDGTPGEIGPPG 183


>M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 545 GGLLCTCPRSPGGGASRAHSGQGSAAGLHPREGPLRVPG 661
           GG  CTC R P G A     G+  A G+    G +  PG
Sbjct: 128 GGGCCTCHRGPPGPA--GDGGRDGADGVDGTPGEIGPPG 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,865,186
Number of Sequences: 27780
Number of extensions: 376679
Number of successful extensions: 1300
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)