Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f24
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.92 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.6  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 689 GCRPVQYLRFQEHAGVPLADAGQQQTLGRYGPARHHHP 576
           G  P Q  + Q+H GV  +   QQQ     G A  + P
Sbjct: 220 GMHPRQQQQAQQHQGVVTSPLSQQQQAAPQGAASANLP 257


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 123 KERPVDGETTKMNMMQAINNAMDITLKNNPT 215
           K +  + +  K   + A+N   DITLKN  T
Sbjct: 67  KRKDKEHKKKKSKTILAVNAEADITLKNAGT 97


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 123 KERPVDGETTKMNMMQAINNAMDITLKNNPT 215
           K +  + +  K   + A+N   DITLKN  T
Sbjct: 67  KRKDKEHKKKKSKTILAVNAEADITLKNAGT 97


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 313 GVLKTRSLPYFSCNPKAHLKTPPNATSSPNNTA 215
           GV     LP+F+CN    + T   A   P  TA
Sbjct: 626 GVFLICWLPFFTCNIMDAICTKLTADCQPGVTA 658


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 578  GGGASRAHSGQGSAAGLHP 634
            GG      + + SAAGLHP
Sbjct: 1714 GGLGGLGGAAEASAAGLHP 1732


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 578  GGGASRAHSGQGSAAGLHP 634
            GG      + + SAAGLHP
Sbjct: 1710 GGLGGLGGAAEASAAGLHP 1728


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = +1

Query: 178 TMQWTSH*RIIQLLYCSVKMSHSGVSSDVLWGYRRNMART 297
           +M W     I++ L  S+ + +      ++WG +    RT
Sbjct: 264 SMYWGQGHAILKGLKTSIILMNGTTLPQIMWGTKETSTRT 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,044
Number of Sequences: 438
Number of extensions: 4517
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)