Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f23
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              25   0.56 
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    25   0.56 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   4.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.1  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 235 VILIVFFY*KFIINNNVSVKTDNESSSLISTEFIFTSD*DESYYKLRSGYSWQSSIT 405
           +ILI+F Y     N  ++  TD+E+   + +E   T D  +   +L+   S   S+T
Sbjct: 15  LILIIFIY----SNETIAQVTDDENCETLQSEVHITKDEYDEIGRLKRTCSGDISVT 67


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 235 VILIVFFY*KFIINNNVSVKTDNESSSLISTEFIFTSD*DESYYKLRSGYSWQSSIT 405
           +ILI+F Y     N  ++  TD+E+   + +E   T D  +   +L+   S   S+T
Sbjct: 15  LILIIFIY----SNETIAQVTDDENCETLQSEVHITKDEYDEIGRLKRTCSGDISVT 67


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 627 SNRAKEYRENACINGAKIKRSNNNFFASGNDADSSGN 517
           SN +     NA  N +    +NNN   + N A+ +GN
Sbjct: 223 SNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGN 259


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 399 HHRSWLENQSDLILFSHLV 455
           HHR WL+    L+   HL+
Sbjct: 2   HHRMWLQQIFILLQMIHLI 20


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 59  DNNYT--YVHNYILSYQKKIKNKIL 127
           +NNY   Y +NY  +Y+K  KN I+
Sbjct: 98  NNNYNNNYNNNYNNNYKKLYKNYII 122


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 59  DNNYT--YVHNYILSYQKKIKNKIL 127
           +NNY   Y +NY  +Y+K  KN I+
Sbjct: 98  NNNYNNNYNNNYNNNYKKLYKNYII 122


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +1

Query: 469 IWWYSSSLFL 498
           +WWY   +FL
Sbjct: 82  LWWYKQGMFL 91


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +1

Query: 469 IWWYSSSLFL 498
           +WWY   +FL
Sbjct: 82  LWWYKQGMFL 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,552
Number of Sequences: 438
Number of extensions: 3630
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)