Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f22
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical ...    33   0.26 
U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    32   0.46 
Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical
           protein C10E2.6 protein.
          Length = 594

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 64  VPPEGGWGYVVCVGLSVIFIAGTAHQPVFGFIYNDFLDE 180
           +PP+GGWG+VV +G   + +        FG +    ++E
Sbjct: 16  LPPDGGWGWVVVLGSFFVHVFADGFVYSFGVLVETLMEE 54


>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 64  VPPEGGWGYVVCVGLSVIFIAGTAHQPVFGFIYNDFLDE 180
           +PP+GGWG+VV +G   I +        FG +    + E
Sbjct: 13  LPPDGGWGWVVVIGSFFIHVFADGFVYSFGILAEKLMIE 51


>Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical
           protein T06D8.5 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 125 LAPRISLFLVLYTMIFWTNLASVLAPLQLYMECFKSH*LLPMSMGS 262
           LA  +++  VLY++ FW  L+ ++ P  L     K   L  M+ GS
Sbjct: 207 LATHLTMAFVLYSIFFWNGLSHLVKPHDLSKVRSKLGALRGMTHGS 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,709,876
Number of Sequences: 27780
Number of extensions: 218377
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)