Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f16
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    30   0.32 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    30   0.32 
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    26   5.2  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   6.9  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   6.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   6.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   6.9  
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    25   9.1  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.1  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   9.1  

>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 297 DAAEERDEQHYDANRDDKDSRGEGVWRQEERD 202
           DA EE +E+  D   ++ D  GEG   +EE D
Sbjct: 173 DADEEEEEEEADEMEEEFDEEGEGDEEEEEED 204


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -2

Query: 390 GSDGRRDLQNEHDAKDHCENVDQAGTLFQGTDAAEERDEQHYDANRDDKDSRGEGVWRQE 211
           G++   D  N +D K+  +NV++        +  EE DE+  + + +D+D  G G  ++ 
Sbjct: 80  GNENEVDNVNNNDKKEDEDNVEENEEEADANEE-EEEDEEDDEEDEEDEDESGGGRRKRA 138

Query: 210 ERD 202
             D
Sbjct: 139 RHD 141


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
 Frame = +1

Query: 13  CNSHTEQTNIVIVIH*YVAKMTQQKELGMKCIKYMLLCITAIFVLTSALTISVGTTIY-- 186
           CNS  +   I +V   Y+A +       +  + ++ +    +++ +  LT ++G   Y  
Sbjct: 198 CNSSIKFRQIFVVFLFYLAGLIITSGFFLNSLSFLKIPFR-VYLDSHDLTPNLGLWWYFF 256

Query: 187 -AIYHDI-SFFLSPYAFSPAIFVIAIGVIMLF------VSLFGCIGALK--ESTCLVNIF 336
             ++++  +FFL  +A  P +FV+ + + + +      ++L G     K   S C ++IF
Sbjct: 257 TEMFNEFRTFFLFVFAILPLMFVLPVSIRLYYLPLPITIALIGLHSLFKAYPSICDLSIF 316

Query: 337 AVILSI 354
             +L I
Sbjct: 317 LSLLPI 322


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 213 EERDVMVDRVN-RSTHGDRQCRC*NKNRCYTQQHVFNALHPQLLLLSHFCNV 61
           ++  V V R +  S+H   +  C N +R  ++   +  +HP +++  H  N+
Sbjct: 49  DDTSVSVVRTSDSSSHCQNEIICLNTHRTISKYEAYGGIHPTIVIHEHQKNL 100


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -2

Query: 393 VGSDGRRDLQNEHDAKDHCENVDQAGTLFQGTDAAEERDEQHYDANRDD--KDSRGEGVW 220
           V  D +RD  N +DA D+ + +++    ++  D  + + E++ DA+ +   K SR   V 
Sbjct: 153 VSWDAKRDRWNGYDATDYKKVIER----YEKLDELQNKGEENRDASENSAVKASRNSTVS 208

Query: 219 RQEE 208
             E+
Sbjct: 209 GSED 212


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 358  FILEIAAAITAYSLRSEVSQFLDKKLREALPLYY 459
            FI  + + ++  SLRS V +F  K+  + LP Y+
Sbjct: 974  FIQHLESEVSFNSLRSFVQEFEKKERLKNLPFYF 1007


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 18/80 (22%), Positives = 36/80 (45%)
 Frame = -2

Query: 429 FVQKL*DLAAKTVGSDGRRDLQNEHDAKDHCENVDQAGTLFQGTDAAEERDEQHYDANRD 250
           F Q+L +L  +  G       + E D  D  E+ D+  + +   +   E ++Q   + +D
Sbjct: 342 FSQRL-NLDPQKPGKSQGEISEQEEDEYDDAES-DEMHSPYSTHEPESEPEDQDEPSEKD 399

Query: 249 DKDSRGEGVWRQEERDVMVD 190
           D++   E    QE+ +  +D
Sbjct: 400 DENKDVEEEQEQEQEEEQID 419


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 288 EERDEQHYDANRDDKDSRGEGVWRQEERDV 199
           EE ++++ D N DD     E  WR   R +
Sbjct: 331 EEAEDEYIDVNTDDSLESAEYRWRSHMRSM 360


>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 25/87 (28%), Positives = 36/87 (41%)
 Frame = -3

Query: 632 TVMWDWAQHESGTVRLAKLMPVPPVGGSTACQSM*LSTPQQFNSY*MKSNASCASACW*Y 453
           TV W W      +V +A          + A +S  L+ PQ   SY    +ASC  A    
Sbjct: 113 TVFWQWMNQ---SVNVA-------FNSANANKSTQLTLPQMTKSYIYAVSASCGVAIGLN 162

Query: 452 RGSASLSFLSRNCETSLRRL*AVMAAA 372
           +    ++FLS + +  L RL    A A
Sbjct: 163 KIVPRMNFLSSSSKAVLGRLTPFAAVA 189


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = +1

Query: 169 VGTTIYAIYHDISFFLS------PYAFSPAIFVIAIGVIMLFVSLFGCIGALKESTCLVN 330
           VGT+ Y  +   S  LS      P +   + F++A G++M    L     +   +  L+ 
Sbjct: 92  VGTSFYLGFMVFSLPLSTLLQKFPLSKVTSAFIVAWGILMTLTCLVHSYASYIATRTLLG 151

Query: 331 IFAVILSIVFILEIA 375
           I   +++  F+L IA
Sbjct: 152 ILESVITPAFVLFIA 166


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 523 DSYMDWHAVDPPTGGTGISFANLT 594
           D+Y  WHA +  TG    S  +LT
Sbjct: 527 DTYAYWHATNGQTGIASFSMGSLT 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,795
Number of Sequences: 5004
Number of extensions: 50537
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)