Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f15
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042           59   1e-09
04_04_1383 - 33144047-33144603,33145554-33147129                       29   1.3  
01_07_0150 + 41508546-41508636,41509384-41510343,41511082-415115...    29   1.3  
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    27   5.3  
02_04_0349 + 22222091-22222639,22222718-22223695                       27   5.3  
04_04_1092 + 30817641-30818171                                         26   7.1  
03_06_0635 + 35210755-35210855,35210938-35211088,35211171-352113...    26   7.1  
04_01_0024 + 344621-344830,344926-345705                               26   9.3  
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654...    26   9.3  

>08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042
          Length = 104

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 22/48 (45%), Positives = 35/48 (72%)
 Frame = +3

Query: 84  WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGR 227
           WR AG+TYI YSN+ A ++RR LK+  ++EA  R++ H  ++ WA+G+
Sbjct: 11  WRAAGMTYIGYSNVCAALVRRCLKEPHKSEAASREKVHFAISKWADGK 58


>04_04_1383 - 33144047-33144603,33145554-33147129
          Length = 710

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 39  FLRIKVNKNNNKMSAWRQAGLTYIN--YSNIAAKV 137
           FLR+  N  N  + AW Q+ L  +N  Y+N +  V
Sbjct: 216 FLRLDANHFNGSLPAWNQSSLKLLNVSYNNFSGPV 250


>01_07_0150 +
           41508546-41508636,41509384-41510343,41511082-41511555,
           41511642-41511736
          Length = 539

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 305 LIVDDFHACWLTIPSSLWNSFLEVCRSSVGPRCDS 201
           ++VDD+  C+ T+ + L +S  E C  S    CD+
Sbjct: 157 IVVDDWTKCYGTVQTFLHSSDAESCSDSFKGECDA 191


>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 341 LNSVIYCTILHKLIVDDFHACWLTIPSSLWN 249
           L+ ++  T L +L++DD   C L +PS   N
Sbjct: 452 LDLLLLATDLRQLVIDDVDCCDLDVPSEFDN 482


>02_04_0349 + 22222091-22222639,22222718-22223695
          Length = 508

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 258 TLEQLSGGVQVVRWP 214
           TLE LSGGV ++ WP
Sbjct: 406 TLESLSGGVPMLSWP 420


>04_04_1092 + 30817641-30818171
          Length = 176

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 150 VTCEAPWLRCLSSLCKLNQLASKRSFCYCS 61
           + CE P    +    + N+  +  +FCYCS
Sbjct: 128 IPCEVPAFEAILKAVEKNKKDNAAAFCYCS 157


>03_06_0635 +
           35210755-35210855,35210938-35211088,35211171-35211341,
           35211864-35212043,35213174-35213303,35213580-35213749
          Length = 300

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 168 LEILALVTCEAPWLRCLSSLCKLNQLASKRS--FCYCSCLLLFSKI 37
           L+I  L+  EA WL  +  L K+N   S R    C  SC  + + +
Sbjct: 128 LDIPKLLHNEAAWLLAVKELQKINSFKSPREKLSCIMSCCQVINNL 173


>04_01_0024 + 344621-344830,344926-345705
          Length = 329

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 IAAKVLRRSLKQEFRAEALKRDESHVRV-TPW 215
           +   V RR +KQE RAEA K  +    V  PW
Sbjct: 273 VTVLVERRMVKQEHRAEAYKLYQKRTSVWIPW 304


>03_05_0822 -
           27963849-27964544,27965043-27965091,27965372-27965480,
           27965979-27966006,27966086-27966276,27966418-27966532,
           27966955-27967206
          Length = 479

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 44  ENKSKQEQ*QNERLEASWFNLHKLLKHRSQGASQVTKARISSRGVET 184
           + K +Q+Q + E + A      K  K RS+GA +  KA+  S+G +T
Sbjct: 391 KRKQQQQQGEEESVRA------KKPKERSEGAKKSNKAKKGSKGRDT 431


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,042,827
Number of Sequences: 37544
Number of extensions: 163625
Number of successful extensions: 427
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)