Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2f14
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915... 31 0.79
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 29 4.2
04_04_0339 - 24513699-24516827 29 4.2
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 29 5.6
01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890 29 5.6
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 29 5.6
09_06_0216 + 21627238-21627834 28 7.4
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 28 7.4
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 28 7.4
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 28 7.4
12_02_1279 + 27510605-27513301 28 9.7
10_08_0297 + 16602176-16602553 28 9.7
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201... 28 9.7
>07_03_0699 +
20772415-20773450,20789050-20789606,20790971-20791567,
20792258-20792413
Length = 781
Score = 31.5 bits (68), Expect = 0.79
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2
Query: 5 PHPTRGRSARPYSRPRPTRRAPAMFDVFGSVKGLLKLDSVCIDNNVFRLHYKATVIILI- 181
PHP RGR P +P APA G + G+ + + R H + +I +
Sbjct: 140 PHPARGRGVHP---RQPIAVAPAARHGAGCLLGVTSNGNTALHLVASRGHAELAALIRVR 196
Query: 182 AFSLLVTSRQYIGDPIDC 235
A SL+ T + + P+ C
Sbjct: 197 APSLVATRNRCLDTPLHC 214
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/72 (26%), Positives = 37/72 (51%)
Frame = +3
Query: 396 IISGFVLCYSFKQSCFMFPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLSTIST 575
++ F +C +K F G+ +A+R + S+ +S + S++STI+T
Sbjct: 232 VLMSFGICIIWKYKGFEKSRGTGRVSNSSATRKTGMRSSFSSMTSSTA----SFVSTIAT 287
Query: 576 RTCTLKTFTLSD 611
T+KTF++S+
Sbjct: 288 CPPTVKTFSISE 299
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 495 WSWILTV-PSLKTSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*WVK 656
W ++ V S K+ + +V S + + T T +L+ +TL L + S L T W++
Sbjct: 272 WKLLIEVLESAKSGSKMIVTSRVPDVVTMTNSLRPYTLKRLLPIDSSNLLTQWMQ 326
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -1
Query: 385 FNFVLSFDMWADAGLHVILSD--AADKSVRDGESRVYPAVR--VHNGERDFINDAVN 227
+ FVLS + AD L V + D SVR G+ R+Y A+ +NG +N N
Sbjct: 33 WTFVLSCNRSADGRLRVYNYEIEVVDVSVRRGQLRIYSAINPWCYNGSTSAMNGQSN 89
>01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890
Length = 595
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 382 NFVLSFDMWA-DAGLHVILSDAADKSVRDGESRV 284
N LSFD W D LH+++ D R+ SRV
Sbjct: 12 NRALSFDDWVPDEALHLVMGHVEDPRDREAASRV 45
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 5 PHPTRGRSARPYSRPRPTRRAPAMFDV--FGSVKGLLKLDSVCIDNNVFRLHYKA 163
P P+ G+ +P SRP PT A+F+V FG+ KG D V D F + A
Sbjct: 115 PTPSCGKGNQPPSRPTPTSPQGAVFNVVDFGA-KG----DGVSDDTKAFEAAWAA 164
>09_06_0216 + 21627238-21627834
Length = 198
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 507 LTVPSLKTSASRVVKSYLSTISTRTCTLKT 596
LTVPS+ T + V SY++T +T T T T
Sbjct: 160 LTVPSVDTYNTSTVTSYVATDNTSTITSST 189
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 625 SSQLYQRSGSKYSSWTSFWTENFQLMAVTWSASQKWSPXNA---WTRWPE 765
S++ +SG++ + W W E + T + K+ N W RW E
Sbjct: 236 SAEKQAKSGAENAGWYEKWWEKYDAKGWTEKGAHKYGRLNEQSWWERWGE 285
>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +3
Query: 264 WTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITNIISGFVLCYSFKQSCF 443
W+ Y L + +L A +RI HM + LN+T I FKQ+ F
Sbjct: 1210 WSFEEAYNLSRDHKPELEAERDRIVKAGGFIHMGRINGSLNLTRAIGDM----EFKQNKF 1265
Query: 444 MFP 452
+ P
Sbjct: 1266 LPP 1268
>02_01_0014 -
87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +3
Query: 375 TKLNITNIISGFVLCYSFKQSCFMFPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKS 554
T+L+ TN +S F S + + +CG GKE S +P L+ A R KS
Sbjct: 704 TELSKTNGVSTFEFIRSGVVAALLDYLSCGTFGKERVSEA-----NLPKLRQQALRRYKS 758
Query: 555 YLS 563
++S
Sbjct: 759 FIS 761
>12_02_1279 + 27510605-27513301
Length = 898
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 249 SRSPLWTRTAGYTLLSPSRTDLSA 320
SR+P+WT TAG T+L L+A
Sbjct: 91 SRTPVWTATAGTTILQSIVLSLTA 114
>10_08_0297 + 16602176-16602553
Length = 125
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 105 SPFTEPKTSNMAGARRVGRGREYGRALRPRVGCG 4
SP + + S A R GRGR G A P G G
Sbjct: 32 SPLSSRRASRAAAGGRGGRGRRKGGAPIPAAGAG 65
>02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,
2018030-2018122
Length = 1375
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 516 PSLKTSASRVVKSYLSTISTRTCTLKTFTLSDSL 617
PSL+ S R++ S L ++ R CT+ L D L
Sbjct: 1014 PSLELSDRRILPSQLKEVTVRGCTIHDGFLHDDL 1047
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,550,347
Number of Sequences: 37544
Number of extensions: 493181
Number of successful extensions: 1492
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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