Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f13
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    46   3e-06
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    27   1.2  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.0  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    27   2.0  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   2.0  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   3.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   4.7  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   6.2  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   8.2  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +2

Query: 125 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLD 304
           +V NF AGPA +   V E    +  NF+  G+ + E SHRS     +    +   R L +
Sbjct: 6   EVVNFAAGPAAMITSVVEEFGKDFVNFQGLGMGVAEISHRSKQGSGIVTSAESNFRKLYN 65

Query: 305 VPDNYKV 325
           +P+N+ +
Sbjct: 66  IPENFHI 72


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
 Frame = -3

Query: 398 QYQFWILSLKEQLQIDQDPHQLKTALCSCPVHLISFAQHP------EFRHLASCMLKNDD 237
           QYQFWI  L   +   ++   +   L   P  L SF   P       F +L  C+ KN  
Sbjct: 167 QYQFWIERLLHGITEKEELQHIYKILTLTPASLDSFQNRPPYIGITTFPNLQHCIKKNQP 226

Query: 236 L 234
           +
Sbjct: 227 I 227


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 185  KNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLL 301
            +N+ +      +SLL  S  S++Y  L +   D+V N+L
Sbjct: 1197 RNQWSQVRALALSLLSDSLNSTSYRLLGISCSDMVSNIL 1235


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 185 KNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNY 319
           +++ T ++ SG+  L T HR     KLN +   ++  +LD+ + +
Sbjct: 211 ESQSTMYKKSGLKTLVTLHRDLGIDKLNQDEVTIITAVLDLREKH 255


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 164 EEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVV 289
           E V  +  N + +   + ++LL T H S T  KLNV   D++
Sbjct: 604 ESVDSVTCNYVLSSSKNPMNLLFTLHNSITDGKLNVHCNDII 645


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 380 LSLKEQLQIDQDPHQLKTALCSCPVHLISFAQ 285
           L+LK+ + I  + H L  A+CS     ISF Q
Sbjct: 352 LTLKDNICIIDEAHNLIDAICSMHSSSISFRQ 383


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 182  IKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNYKV 325
            +  EL   E S   LLE + R S +      ++  +++L DVP   K+
Sbjct: 2671 VLTELAKHEGSSELLLECAWRISDWSNNRESLEVAIKSLSDVPTPRKL 2718


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -3

Query: 350 QDPHQLKTALCS-CPVHLISFAQHPEFRHLASCMLKNDDLFPIN*FQNFQ 204
           +DP Q K A+C  C     SF Q      L+ C L+ D    +  + N+Q
Sbjct: 277 RDPGQ-KLAICQKCDFAFCSFCQATWHGDLSPCKLEGDSKKLVEMYLNYQ 325


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 126 LDIFTYLFI*LIPTLHYFTKRH 61
           ++ FT LFI  +PT  YF K H
Sbjct: 581 VNTFTNLFIPAVPTDSYFFKYH 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,363
Number of Sequences: 5004
Number of extensions: 33184
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)