Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f13
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0398 + 3092577-3093857                                           60   1e-09
06_01_0746 + 5580755-5582119                                           27   6.2  
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426...    27   6.2  
03_06_0531 + 34552206-34552598,34552665-34552735,34553363-345533...    27   6.2  

>03_01_0398 + 3092577-3093857
          Length = 426

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = +2

Query: 128 VFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDV 307
           V+NF AGPA LP  V +  + EL ++  SG+S++E SHR   +     + +  +R LL V
Sbjct: 65  VYNFAAGPATLPLSVLQRAQAELVDYRGSGMSIMEMSHRGKEFDAAIKKAEADLRALLAV 124

Query: 308 PDNYKVXXXXXXXXXXXXXVPLNL-ISRTGTADYVAN 415
           PD ++V              PLNL  S +  AD+V +
Sbjct: 125 PDTHEVLFLQGGATSQFAAAPLNLCASPSDPADFVVS 161


>06_01_0746 + 5580755-5582119
          Length = 454

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 113 VKMSKVFNFGAGPAKLPEEVYEIIKNELTN 202
           ++ S + + GA    LPE+VYE +K E  +
Sbjct: 317 LRSSTIIDSGASITTLPEDVYEAVKAEFVS 346


>06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,
            4263151-4263315,4263416-4263544,4263758-4263858,
            4264527-4264596,4265080-4265331,4265828-4265897,
            4266281-4266341,4266916-4267003,4267746-4267830,
            4268168-4268234,4268442-4268559,4268843-4268923,
            4269022-4269267,4269670-4269771,4269847-4269914,
            4270040-4270171,4270283-4270430,4270504-4270790,
            4270920-4271067,4271156-4271331,4271407-4271518,
            4271614-4271667,4273134-4273244,4273317-4273478,
            4273627-4273814,4273948-4274137,4274297-4274464,
            4274832-4274912
          Length = 1359

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +2

Query: 113  VKMSKVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLN 268
            +K SK+       A +  +   +++N ++  E  G+++L  +HR ST MK++
Sbjct: 1273 LKSSKILCLDECTANVDNQTASLLQNTISA-ECKGMTVLTIAHRISTVMKMD 1323


>03_06_0531 +
           34552206-34552598,34552665-34552735,34553363-34553369,
           34553603-34553736,34553834-34554245,34554655-34554753,
           34555059-34555283,34555652-34556029,34556412-34556555,
           34556832-34556927,34557228-34557547,34557965-34558040
          Length = 784

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -3

Query: 410 LHNQQYQFWILSLKEQLQIDQDPHQLKTALCSCPVHLISFAQHPEFRHLAS 258
           +H +  Q++I +  E+LQ +  P+ L +AL     HL  F+Q P  R L S
Sbjct: 525 VHTESIQYFIPAA-ERLQEELGPNALASALA----HLSGFSQPPSSRSLIS 570


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,559,025
Number of Sequences: 37544
Number of extensions: 192760
Number of successful extensions: 388
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)