Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f13
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical pr...    77   9e-15
AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical ...    29   1.4  
AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical...    27   5.6  
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U40799-4|AAA81482.1|  426|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF022978-7|AAG24177.2|  403|Caenorhabditis elegans Nuclear hormo...    27   9.8  

>Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical
           protein F26H9.5 protein.
          Length = 370

 Score = 76.6 bits (180), Expect = 9e-15
 Identities = 38/92 (41%), Positives = 53/92 (57%)
 Frame = +2

Query: 134 NFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPD 313
           NF AGPAKLPEEV   ++ E  NF N G+S++E SHRS  +  L  E   ++R L++VPD
Sbjct: 9   NFAAGPAKLPEEVLLKMQEEQLNFNNLGVSVIEMSHRSKEFGALLNETISLIRELMNVPD 68

Query: 314 NYKVXXXXXXXXXXXXXVPLNLISRTGTADYV 409
           N+++             +PLNL      ADY+
Sbjct: 69  NFEILFMQGGGTGQFAAIPLNLKGDHEHADYI 100


>AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical
           protein T05E7.3 protein.
          Length = 997

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -1

Query: 157 FSRSSAKIKHFRHFHLFIYLINSYTTLFYQTTLSFSDVSRYDVVLS 20
           F+RSS +++      LFI + N   + F +++LS+ DV     VLS
Sbjct: 717 FARSSGELEKNYIAELFIKITNPKASRFSESSLSWKDVKMSKTVLS 762


>AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical
           protein Y43F8B.13 protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = -1

Query: 223 TNSRIFKICQFILNNFIDFFWQFSRSSAKIKHFRHFHLFIYLINSYTTLFYQTTL----S 56
           ++S IF     +L++F    +Q    S  I H +H H   Y +   T  F Q+ L    S
Sbjct: 239 SHSDIFNYMDEVLSHFPCNLFQRGVLSKAINHAKHCHKNFYALGFLTDKFRQSILRSMRS 298

Query: 55  FSDVSRYD 32
            +D   YD
Sbjct: 299 MADHELYD 306


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 208 FKICQFILNNFIDFFWQFSRSSAKIKHFRHF 116
           F+I + IL+    FFW F+   A + H  HF
Sbjct: 505 FRIPKLILDVLWIFFWIFTHFFAPLVHLLHF 535


>U40799-4|AAA81482.1|  426|Caenorhabditis elegans Hypothetical
           protein F42C5.2 protein.
          Length = 426

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 96  LIPTL-HYFTKRHYRSQTCRGTMWFCLP 16
           L+PT+ HYF  +H+         W CLP
Sbjct: 228 LVPTIIHYFYLQHFSVPFDPDVTWVCLP 255


>AF022978-7|AAG24177.2|  403|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 131 protein.
          Length = 403

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 137 FGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDN 316
           FG   A++ E+  +I+ N L ++      +   S R +  +K+N  I + +RN     D 
Sbjct: 321 FGGKIAEVMEKFMDILSNNLHDYYIQEKMMPRYSGRLTKLLKINTAILENIRNYRTRADI 380

Query: 317 YKV 325
            KV
Sbjct: 381 AKV 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,282,381
Number of Sequences: 27780
Number of extensions: 187362
Number of successful extensions: 496
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)