Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f10
         (111 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    20   2.0  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    20   2.0  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    19   4.7  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 70  KNKLLKSFSCLIIHDLRGVA 11
           K KLL +  CL+I+ L  V+
Sbjct: 273 KEKLLAANLCLVIYTLVSVS 292


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 70  KNKLLKSFSCLIIHDLRGVA 11
           K KLL +  CL+I+ L  V+
Sbjct: 273 KEKLLAANLCLVIYTLVSVS 292


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 79  YLTKNKLLKSFS 44
           Y+ ++KLLK+F+
Sbjct: 168 YVVRDKLLKAFT 179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,584
Number of Sequences: 336
Number of extensions: 233
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 17
effective length of database: 116,873
effective search space used:  2220587
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)