Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f03
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690...    46   3e-05
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84...    41   0.001
04_04_0881 + 29055724-29059197                                         33   0.18 
02_05_0445 + 29088216-29088362,29089161-29089386,29089903-290899...    29   4.0  
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687...    29   5.2  

>06_01_0897 -
           6903294-6903401,6903781-6903855,6904239-6904379,
           6904496-6904646,6905035-6905178,6905276-6905366,
           6906071-6906308
          Length = 315

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 21/83 (25%), Positives = 45/83 (54%)
 Frame = +3

Query: 330 ALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTTFRALW 509
           AL + L   D  L+     F+ G+T+   D  L P+L H+ +A  ++ ++ +P +   + 
Sbjct: 193 ALLSELTSFDSYLKDNGP-FINGETISAADLSLAPKLYHMEIALGHYKNWSVPDSLSHVK 251

Query: 510 RYMYHMYQLDAFTQSCPADQDII 578
           +YM  ++ +D+F ++    +D+I
Sbjct: 252 KYMKTIFSMDSFVKTIALQEDVI 274


>05_01_0123 -
           846081-846167,846264-846404,846749-846866,847382-847528,
           848439-848441,848590-848627,848808-848851,848959-849016
          Length = 211

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
 Frame = +3

Query: 240 VQDKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGRIDGLLERRETR--FLTGDTMCC 413
           V   E AS+   ++S     L  KD    +  +A L  +  L E  +    F+ G  +  
Sbjct: 89  VTPPEYASVGSKIFSCFTTFLKSKDPNDGSE-KALLTELQALEEHLKAHGPFINGQNISA 147

Query: 414 FDCELMPRLQHIRVAGKYFVDFEIPTTFRALWRYMYHMYQLDAFTQSCPADQDII 578
            D  L P+L H++VA ++F  ++IP     +  Y   ++  ++F ++  A + +I
Sbjct: 148 ADLSLAPKLYHLQVALEHFKGWKIPEDLTNVHAYTEALFSRESFIKTKAAKEHLI 202


>04_04_0881 + 29055724-29059197
          Length = 1157

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 429 MPRLQHIRVAGKYFVDFEIPTTFRALWRYMYHMYQLDAFTQSCPA 563
           +P+LQ++ +AG  F   ++P  F +LW   +    +++FT S PA
Sbjct: 536 LPQLQYVSLAGNSFSG-DVPEGFSSLWSLRHLNLSVNSFTGSMPA 579


>02_05_0445 +
           29088216-29088362,29089161-29089386,29089903-29089976,
           29090129-29090353
          Length = 223

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 405 MCCFDCELMPRLQHIRVAGKYFVDFEIPTTFRALWRYMYHMYQLDAFTQSCP 560
           MCC+   L    QH+    +  V   + + F A+W  ++++   +AF  S P
Sbjct: 145 MCCYLSWLRVS-QHLHTLNQVLVGAIVGSAFGAMWFALFNLLVQEAFASSVP 195


>06_03_1496 -
           30567968-30568210,30568345-30568513,30568635-30568736,
           30569087-30571855,30572402-30572430,30572546-30572659,
           30572735-30572846,30574730-30574845,30574928-30575068,
           30575121-30575243,30575346-30575478,30575842-30575972,
           30576065-30576300,30577073-30577376
          Length = 1573

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +3

Query: 204 IMKSVPGGHNLFVQDKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGR-IDGL 365
           ++K+  GG   +V+DK   ++  NLYS  +L+ V+    ++ ++ A+L   +DGL
Sbjct: 368 LLKTTNGGKT-WVRDKAADNIAANLYSVNQLIRVQLTLLQTISVSANLAELVDGL 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,825,642
Number of Sequences: 37544
Number of extensions: 451885
Number of successful extensions: 1379
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)