Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f03
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY308063-1|AAQ75554.1|  290|Caenorhabditis elegans EXC-4 protein.     141   6e-34
AL132876-18|CAD21669.2|  290|Caenorhabditis elegans Hypothetical...   141   6e-34
Z81515-5|CAB04193.2|  238|Caenorhabditis elegans Hypothetical pr...    70   2e-12
AL132948-33|CAD57708.2|  734|Caenorhabditis elegans Hypothetical...    36   0.023
AL132948-32|CAD31833.3|  731|Caenorhabditis elegans Hypothetical...    36   0.023
Z66520-6|CAA91385.1|  226|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81561-1|CAB04552.2|  550|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF099925-13|AAC69503.2|  287|Caenorhabditis elegans Hypothetical...    28   6.2  

>AY308063-1|AAQ75554.1|  290|Caenorhabditis elegans EXC-4 protein.
          Length = 290

 Score =  141 bits (341), Expect = 6e-34
 Identities = 88/219 (40%), Positives = 119/219 (54%), Gaps = 22/219 (10%)
 Frame = +3

Query: 6   GACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILI--DNGLAIL 179
           GA LFCQE++M+LY L E+    ++V TV++      F+ NF    PPI+I  +  L   
Sbjct: 34  GADLFCQEFWMELYALYEIGVARVEVKTVNVNSEA--FKKNFLGAQPPIMIEEEKELTYT 91

Query: 180 ENEKIERHIMKSVPGGH-NLFVQDKEVASLIENLYSKLKLVL---VRKDEQKS------- 326
           +N +IE  I       +  LF +D      IENLY   KL L   V  D+ K        
Sbjct: 92  DNREIEGRIFHLAKEFNVPLFEKDPSAEKRIENLYRNFKLFLRAKVEFDKGKKEPSRVED 151

Query: 327 --AALRAH-------LGRIDGLLERRETRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDF 479
             A ++ H       L  ID LL  R++R+L G++M  +DCELMPRL HIR+ G   + F
Sbjct: 152 LPAQIKVHYNRVCEQLSNIDQLLSERKSRYLLGNSMTEYDCELMPRLHHIRIIGLSLLGF 211

Query: 480 EIPTTFRALWRYMYHMYQLDAFTQSCPADQDIINHYKLQ 596
           +IP  F  LW Y+   Y+  AF +SCPADQDII+HYK Q
Sbjct: 212 DIPHNFTHLWAYILTAYRTAAFIESCPADQDIIHHYKEQ 250


>AL132876-18|CAD21669.2|  290|Caenorhabditis elegans Hypothetical
           protein Y105E8A.22 protein.
          Length = 290

 Score =  141 bits (341), Expect = 6e-34
 Identities = 88/219 (40%), Positives = 119/219 (54%), Gaps = 22/219 (10%)
 Frame = +3

Query: 6   GACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILI--DNGLAIL 179
           GA LFCQE++M+LY L E+    ++V TV++      F+ NF    PPI+I  +  L   
Sbjct: 34  GADLFCQEFWMELYALYEIGVARVEVKTVNVNSEA--FKKNFLGAQPPIMIEEEKELTYT 91

Query: 180 ENEKIERHIMKSVPGGH-NLFVQDKEVASLIENLYSKLKLVL---VRKDEQKS------- 326
           +N +IE  I       +  LF +D      IENLY   KL L   V  D+ K        
Sbjct: 92  DNREIEGRIFHLAKEFNVPLFEKDPSAEKRIENLYRNFKLFLRAKVEFDKGKKEPSRVED 151

Query: 327 --AALRAH-------LGRIDGLLERRETRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDF 479
             A ++ H       L  ID LL  R++R+L G++M  +DCELMPRL HIR+ G   + F
Sbjct: 152 LPAQIKVHYNRVCEQLSNIDQLLSERKSRYLLGNSMTEYDCELMPRLHHIRIIGLSLLGF 211

Query: 480 EIPTTFRALWRYMYHMYQLDAFTQSCPADQDIINHYKLQ 596
           +IP  F  LW Y+   Y+  AF +SCPADQDII+HYK Q
Sbjct: 212 DIPHNFTHLWAYILTAYRTAAFIESCPADQDIIHHYKEQ 250


>Z81515-5|CAB04193.2|  238|Caenorhabditis elegans Hypothetical
           protein F26H11.5 protein.
          Length = 238

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 34/95 (35%), Positives = 51/95 (53%)
 Frame = +3

Query: 303 VRKDEQKSAALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFE 482
           V+  E +  A    L R+D  L  +ET+FL  D +   DC ++ RL  IRVA K   ++E
Sbjct: 116 VKDVEHRDTAFNTELLRLDKYLSEQETKFLISDDVTHIDCLVLTRLHSIRVAAKMLKNYE 175

Query: 483 IPTTFRALWRYMYHMYQLDAFTQSCPADQDIINHY 587
           IP     +  Y+   Y  + F  SCP+DQ+I+ H+
Sbjct: 176 IPADLSHVLDYLKAGYATEMFRVSCPSDQEIVLHW 210


>AL132948-33|CAD57708.2|  734|Caenorhabditis elegans Hypothetical
           protein Y39B6A.43b protein.
          Length = 734

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 21/49 (42%), Positives = 28/49 (57%)
 Frame = +3

Query: 243 QDKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGRIDGLLERRETRF 389
           Q    ++  ENL+ +LKL L+R++ Q      A L R DGLL R E RF
Sbjct: 650 QQSTSSTSAENLH-ELKLQLIRREMQNQDRFSAVLDRADGLLARMEQRF 697


>AL132948-32|CAD31833.3|  731|Caenorhabditis elegans Hypothetical
           protein Y39B6A.43a protein.
          Length = 731

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 21/49 (42%), Positives = 28/49 (57%)
 Frame = +3

Query: 243 QDKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGRIDGLLERRETRF 389
           Q    ++  ENL+ +LKL L+R++ Q      A L R DGLL R E RF
Sbjct: 647 QQSTSSTSAENLH-ELKLQLIRREMQNQDRFSAVLDRADGLLARMEQRF 694


>Z66520-6|CAA91385.1|  226|Caenorhabditis elegans Hypothetical
           protein F49E12.8 protein.
          Length = 226

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 246 DKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGRIDGLLERRETRF 389
           D E  ++I+ L S+ KL +VR++EQ+          +  +  RRE+ F
Sbjct: 170 DDEDLTVIQQLKSRRKLSMVRQEEQEELTASMDRMNVGSVHSRRESGF 217


>Z81561-1|CAB04552.2|  550|Caenorhabditis elegans Hypothetical
           protein K03D10.3 protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 24  QEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTN 128
           + Y ++ +++  +K +   +  +D +KPP + RTN
Sbjct: 38  KRYMVEKFIINTVKKVVAVIIHIDFRKPPQEVRTN 72


>AF099925-13|AAC69503.2|  287|Caenorhabditis elegans Hypothetical
           protein K01A2.1 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 108 PPDFRTNFEATHPPILIDNGLAILENEKIERHIMKS 215
           P D RT F A HP + ID  +  L  E+I  + ++S
Sbjct: 147 PKDGRTLFSARHPTVTIDKRIKKLAAERIITNKIRS 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,117,518
Number of Sequences: 27780
Number of extensions: 362087
Number of successful extensions: 1139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)