Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f02
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81122-1|CAB03353.1|  124|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    29   3.4  
M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein ( C.ele...    28   5.9  

>Z81122-1|CAB03353.1|  124|Caenorhabditis elegans Hypothetical
           protein T13F2.2 protein.
          Length = 124

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
 Frame = +3

Query: 315 AEKKAKMADRTNDKEPTWVLQ--GKKLLKVREFKGKVYVDIREFY--EKNGELLPGKKGI 482
           A+ + +++ R  D +   + +    +   V +FKGK YV+IRE+Y    + +++P +KGI
Sbjct: 44  AKNEEEVSGRLKDSDGNEMFEIGNLRYATVSKFKGKEYVNIREYYIDRDSQKMMPSRKGI 103

Query: 483 SLTPEQWRKLLSVGEEVNE 539
           SL+  QW  L  +  E+++
Sbjct: 104 SLSKAQWANLKDLIPEIDK 122


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 506 SPLFWSETYPFFTW*KFTILFIKFSYVY 423
           +P+FW + YPFF   +F   F  F  V+
Sbjct: 373 TPIFWEKIYPFFRIFRFFSNFYTFPVVF 400


>M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 70A gene, complete cds. ).
          Length = 640

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 471 KKGISLTPEQWRKLLSVGEEVNETVSSMC 557
           KK ++  P   R+L +  E  NET+SS C
Sbjct: 251 KKDLASNPRALRRLRTACERANETLSSSC 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,388,658
Number of Sequences: 27780
Number of extensions: 176774
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)