Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2f01
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    28   4.0  
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923...    28   5.3  
12_01_0189 + 1397068-1397241,1397713-1397804,1398456-1398546,139...    27   7.1  
03_05_0495 - 24907659-24908747                                         27   7.1  

>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 141 IRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYIEASFTIADR 302
           + + V +  +HH  ++    Q   +  L I+   +F++LQ Y Y  A ++ ADR
Sbjct: 240 VLAAVGIIQSHHFWLDVEHIQEAIQNVLVIIEMVFFSVLQQYAYHVAPYSGADR 293


>06_02_0041 +
           10889741-10890092,10890161-10890235,10891139-10892341,
           10892970-10893253,10893343-10893459,10894126-10894388,
           10894557-10894725,10894838-10895110,10895674-10895718,
           10896472-10896591,10896926-10896987,10897296-10897318,
           10897911-10898128
          Length = 1067

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 19  IFELFSIEDYPQILKLEEYD---PLQELHHLIHSK 114
           IFE  ++ED P ++K+  YD   P  E+  L H++
Sbjct: 545 IFEFDAMEDPPSVMKINVYDFDGPFDEVESLGHAE 579


>12_01_0189 +
           1397068-1397241,1397713-1397804,1398456-1398546,
           1398931-1399052,1399142-1399289,1399596-1399665,
           1400465-1400517,1400678-1400822,1401308-1401426,
           1401480-1401527,1401528-1401599,1401902-1402024,
           1402025-1402131,1402437-1402547,1402585-1402777,
           1402959-1403129,1403548-1403673
          Length = 654

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 170 SSLIDRK*LLTNKTKIIFNYFIRILFYYFTS 262
           SSL  R+  + +  K++ NY+  ILF  F S
Sbjct: 393 SSLASRRPRILDTQKVLINYYAMILFQVFVS 423


>03_05_0495 - 24907659-24908747
          Length = 362

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 306 YGSTFFIATGFHGIHVI----IGTLFLLICYIRHLNNHFSKNHHF 428
           +GS FF+ T  H I V+    +   F L C I+  ++ + + H+F
Sbjct: 238 FGSQFFVLTRKHAIMVVRDMKLWRKFKLPCLIKRRDSCYPEEHYF 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,533,553
Number of Sequences: 37544
Number of extensions: 178201
Number of successful extensions: 365
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)