Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2e23
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632...    29   5.2  

>03_02_0195 -
           6325907-6326173,6326996-6327149,6327245-6327336,
           6327433-6327534,6328406-6328528,6328635-6328683,
           6328759-6328854,6328937-6329276,6329428-6329643,
           6329759-6329864,6330144-6330192,6330519-6330792,
           6330870-6330960,6331663-6331994,6332084-6332261,
           6332815-6332872,6332956-6333089
          Length = 886

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 285 DTCASYYAHW*FQACGNSRDESLEYSRS 202
           D CASY+ H  F+ C N   + + + +S
Sbjct: 128 DGCASYFFHKNFKECANENSKCIRWQKS 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,878,520
Number of Sequences: 37544
Number of extensions: 315123
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)