Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2e23
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger pro...    29   3.5  
L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger pro...    29   3.5  
U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 839

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 293 PVPTPVPAIMLIGNSRPVVIPETRVSNILGVGA 195
           P+P P P + ++ +  P+ I   +V+N+LG+G+
Sbjct: 223 PLPPPAPRLHMLAD--PLPIKSNKVNNVLGLGS 253


>L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform a protein.
          Length = 867

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 293 PVPTPVPAIMLIGNSRPVVIPETRVSNILGVGA 195
           P+P P P + ++ +  P+ I   +V+N+LG+G+
Sbjct: 223 PLPPPAPRLHMLAD--PLPIKSNKVNNVLGLGS 253


>U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical
           protein F20A1.4 protein.
          Length = 580

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -3

Query: 344 SILPILSVCILTTNCNAPVPTPVPAIMLIGNSRPVVIPETRVSNILGVGA 195
           +I+P +++C+L    N  +     +I+LI N+    IP  R+S + G+ A
Sbjct: 182 TIIPSVTLCVLNLLQNICIMMVALSILLIRNTYNWCIPTVRLSFLRGIQA 231


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
           protein F01G4.3 protein.
          Length = 1266

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 157 MTVTLLLLCCASSAPTPRIFETLVSGITTGLE 252
           +T T++++C  S+ P P + + L+SG    LE
Sbjct: 707 LTGTVIIICKDSTVPQPDVLKNLISGQALRLE 738


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,534,638
Number of Sequences: 27780
Number of extensions: 310883
Number of successful extensions: 814
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)