Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2e22
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 35 0.032
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 33 0.074
03_06_0471 + 34169562-34169892,34170121-34170347 33 0.098
05_05_0219 + 23371561-23371680,23371799-23372207,23374520-233746... 31 0.39
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 30 0.69
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 0.69
01_01_0082 + 625198-625719 28 3.7
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 27 4.9
04_03_0904 + 20717005-20718087 27 4.9
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 4.9
08_02_1289 - 25923916-25924586,25925148-25926630 27 6.4
02_05_1252 + 35261135-35261935 27 6.4
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 27 6.4
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 8.5
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 34.7 bits (76), Expect = 0.032
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +2
Query: 53 KFFXIFVLALLA--MANAQDPVKVVENADSGNGYEPIDNRPYIXNPPKDYNPNGNGYEPI 226
K +F L L A +A+A+ +N +E P +PP P+ + Y+P
Sbjct: 11 KALLVFALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPP----PSPDYYDPP 66
Query: 227 DNGAYYVDPPQGRPYFKPTPFPGARGG 307
+ YY DPP Y+ P P P GG
Sbjct: 67 HSPDYY-DPPPSPDYYDPPPSPYYGGG 92
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 33.5 bits (73), Expect = 0.074
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +2
Query: 107 PVKVVENADSGNGYEPIDNRPYIXNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFK 277
P + + Y P + P PP Y P +G P N + Y +PP GRP
Sbjct: 381 PPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSG 439
Query: 278 PTPFPGARG 304
P P GA G
Sbjct: 440 PPPSYGAGG 448
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 33.1 bits (72), Expect = 0.098
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 146 YEPIDNRPYIXNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 295
Y P P PP Y P+ GY P GAY PP G +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>05_05_0219 +
23371561-23371680,23371799-23372207,23374520-23374635,
23375385-23375855
Length = 371
Score = 31.1 bits (67), Expect = 0.39
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Frame = +2
Query: 53 KFFXIFVLALLAMANAQDPVKVVENADSGNGYEPIDNRPY----IXNPPKDYNPNGNGYE 220
+F + V+ LLA+A P A G P + P K+ + NG
Sbjct: 5 RFAAVVVVLLLALALIPGPAAAAGRALQGEKARPSEAAPAPTVAAGGSHKESAKSSNGQN 64
Query: 221 PIDNGAYYVDPPQGRPYFKPTPFP 292
P+ ++ PP +P TP P
Sbjct: 65 PVTKETHHQTPPPAKPPKDQTPPP 88
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 30.3 bits (65), Expect = 0.69
Identities = 20/59 (33%), Positives = 24/59 (40%)
Frame = +2
Query: 95 NAQDPVKVVENADSGNGYEPIDNRPYIXNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPY 271
+AQ P V DS GY + RP P Y P G + GA PP G P+
Sbjct: 762 HAQGPYGVPPGGDSRPGYSQPEQRPAYSQP---YPPYGAPPQQPPYGAPSQQPPYGAPH 817
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 30.3 bits (65), Expect = 0.69
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 164 RPYIXNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 280
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +2
Query: 137 GNGYEPIDNRPYIXNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 289
G Y+P R PP+ P Y P G Y PQG+PY P P+
Sbjct: 247 GETYQPQPQRETY--PPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291
>01_01_0082 + 625198-625719
Length = 173
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 137 GNGYEPIDNRPYIXNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF-PGARGG 307
G GY P + NP YNP +G+ N Y+ PP G Y + F P A G
Sbjct: 100 GGGYNPTPS----YNPTPGYNPTPSGWFTPPNMPSYLTPP-GTLYPQDPGFRPNAAAG 152
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 152 PIDNRPYIXNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 292
P + P I P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 179 NPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 292
NPP Y P Y+P PP +P KPTP P
Sbjct: 237 NPPPTYKPAPPTYKPQPKPN---PPPTYKPQPKPTPTP 271
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 232 RCILRGPSPR-PTLLQAYPFPWCSRW 306
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 27.1 bits (57), Expect = 6.4
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 418 ALQYVYLFIPLT*I---HXKF*NILLIHYFVXNFXRYSLLPTASTRERGRLEV 269
ALQY+Y +P+ + H K NILL F YSL+P + +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571
>02_05_1252 + 35261135-35261935
Length = 266
Score = 27.1 bits (57), Expect = 6.4
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = +2
Query: 98 AQDPVKVVENADSGNGYE--PIDNRPYIXNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPY 271
A PV V+ + + YE P++ PP G EP+ G + + P P
Sbjct: 186 AAGPVMVIASTFANATYERLPLEEEEEGSGPPMP-----GGAEPLMAGGHGIADPSALPM 240
Query: 272 FKPTPFPGARGG 307
F P G GG
Sbjct: 241 FNLPPSNGLGGG 252
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 137 GNGYEPIDNRPYIXNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT-PFP 292
G+G +N+ Y N PK +P NG Y P G+P++ P P P
Sbjct: 113 GHGNPNKNNQAYHRNGPKRRSPAANGTPSYPAAMPYHQHP-GQPFYYPVIPSP 164
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 205 WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 324
W RLR R +L+ P+P P + + RW K +L
Sbjct: 836 WDRLRENSFRILLQFPTPLPGISSSTSIDSVIRWAKKLVL 875
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,501,525
Number of Sequences: 37544
Number of extensions: 236954
Number of successful extensions: 632
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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