Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2e21
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    80   4e-16
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    30   0.28 
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    28   1.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.0  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    27   2.0  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.6  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   3.5  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    27   3.5  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    25   8.1  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   8.1  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   8.1  

>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 79.8 bits (188), Expect = 4e-16
 Identities = 37/117 (31%), Positives = 61/117 (52%)
 Frame = +2

Query: 125 ITDTQKIGVGLAXXXXXXXXXXXXXXXXXXXXAIGNILFISGLTCVIGIQRTFFFFFQRH 304
           ++D QKIGVG                      ++GN+L + G   + G  ++  FF ++ 
Sbjct: 3   LSDLQKIGVGTTALGFLFMIMGIFMFFDGPLLSLGNLLLVFGFFMIAGFSKSVSFFLRKD 62

Query: 305 KLKASVAFFSGITIVLLGWPMIGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLN 475
           ++  S++FFSG+ + L  +P+IG   E  GF  LF+ F P  I+FLR VP +G  ++
Sbjct: 63  RMLGSISFFSGLLLTLFHFPIIGFFVECLGFFNLFKVFYPLIISFLRTVPYIGPYID 119


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 316 VRRLLQWDHYSTARLAHDRDDSRDVRLLAV 405
           V R L W H+ST  LA+DR   R V L  V
Sbjct: 83  VERKLGWGHFSTVWLAYDRAAKRRVALKVV 112


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 390 YISAIIPIMGQPSST-IVIPLKKATDAFSLCRWKKKKNVLWMPITHVRPLMNRILPMARR 214
           +I   + +  QP +T + +P     D F +  W KK +  W+P  +V   +N I P+ARR
Sbjct: 491 FIPWSLEVEKQPVTTKLKVPNLVRNDKF-VRLWHKKDDTFWVPKANV--FINFISPIARR 547


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -3

Query: 361  PAEQYYSDPTEEGDGRLQLVPLEEEEKRPLDADHTCQTTYEQD 233
            P   YY D   + D  ++  P    +    DA+H    T+ QD
Sbjct: 1755 PQRSYYYDDLFDDDTTIRNAPSFRPQMGSFDAEHAVGATFSQD 1797


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 203 TTEVLRGIEMSFRNQLGLRQSSVYPLSQAYLIINFH 96
           T E    +++S RN++ L+QSS+  + ++Y   NFH
Sbjct: 23  TLEAELKLKLSHRNKIPLKQSSIEEIKESY---NFH 55


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 334 TEEGDGRLQLVPLEEEEKRPLDADHTCQTTYE-QDIANG*ETFIEQQKY 191
           TEE D   + V  E   K P    HT  + Y+ +D     E  +EQ ++
Sbjct: 376 TEENDSTTEYVNTESSSKTPAPHKHTFNSCYQKKDYGYIPEVSVEQNRH 424


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 426 EGRNPLNNSKKPYISAIIPIMGQPSSTIVIP 334
           +G+ PLN  +K  I +I+     PSS+++ P
Sbjct: 137 KGKTPLNEIEKEGIISILNKSASPSSSVISP 167


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 251 LTCVIGIQRTFFFFFQRHKLKASVAFFSGITIVLLGWPMI 370
           + C+IGI  +F  F  RH L     + SG+  + +   M+
Sbjct: 190 INCLIGIWWSFIMFRYRHDLLQVQKYISGVVALSIVCTMV 229


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 279 VLWMPITHVRPLMNRILPMARRPLSNNRSTPRNRNVIPKPAR 154
           V + P++  + L  R   +A   LSNN S+PRN     K AR
Sbjct: 172 VCYAPLSSFKTLSERESHVANC-LSNNSSSPRNMTEFLKHAR 212


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 365 MIGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLNLP 481
           ++G++      L+LF  F+P   NF   VP L  L+  P
Sbjct: 298 VVGILGHFSKTLMLF--FIPQIFNFALSVPQLFGLVECP 334


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 272 GCRSHMSDHL*TGYCQWLGDLYRTTEVLRGIE 177
           G  S  +D    G+ QW+   YR  E +RG E
Sbjct: 522 GVDSWFNDTENNGHAQWVHPDYRNKEYIRGTE 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,255
Number of Sequences: 5004
Number of extensions: 59188
Number of successful extensions: 206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)