Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2e21
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0109 + 5671418-5671631,5675610-5675690,5676249-5676340,567... 109 3e-24
07_03_1120 + 24123822-24124318,24125877-24126006,24127334-241273... 93 1e-19
10_05_0115 - 9300918-9300972,9301299-9301396,9301476-9301556,930... 76 2e-14
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 32 0.39
07_03_1572 - 27815760-27815819,27816374-27816494,27816580-278166... 30 1.6
07_03_0037 + 12709014-12709104,12709407-12709612,12710033-127100... 29 4.8
06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026 29 4.8
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346... 29 4.8
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794... 28 6.4
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 28 6.4
03_01_0354 + 2785998-2787623 28 8.4
>03_02_0109 +
5671418-5671631,5675610-5675690,5676249-5676340,
5676433-5676513,5676594-5676691,5676872-5676953,
5677050-5677088
Length = 228
Score = 109 bits (261), Expect = 3e-24
Identities = 53/140 (37%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Frame = +2
Query: 101 SLLLNML--EITDTQKIGVGLAXXXXXXXXXXXXXXXXXXXXAIGNILFISGLTCVIGIQ 274
SLL NM+ E+ D +KIG+GL A+GNILF+SGL IG++
Sbjct: 84 SLLNNMVSFEMNDLKKIGLGLTGFGVFFSFLGIIFFFDKGLIAMGNILFLSGLGLTIGLK 143
Query: 275 RTFFFFFQRHKLKASVAFFSGITIVLLGWPMIGMIAEMYGFLLLFRGFLPSAINFLRMVP 454
T FF + K +++F +G +VL+GWP GM+ E YGF++LF GF P+ + FL+ +P
Sbjct: 144 STMQFFTKPKNYKGTISFGAGFFLVLIGWPFFGMLLEAYGFVVLFSGFWPTLVVFLQRIP 203
Query: 455 VLGSLLNLPIIRGIVDRIAG 514
++G + P + +DR G
Sbjct: 204 IIGWIFQQPFVTSFLDRYRG 223
>07_03_1120 +
24123822-24124318,24125877-24126006,24127334-24127379,
24128364-24128455,24128550-24128630,24128735-24128832,
24128972-24129053,24129166-24129258
Length = 372
Score = 93.5 bits (222), Expect = 1e-19
Identities = 46/119 (38%), Positives = 67/119 (56%)
Frame = +2
Query: 140 KIGVGLAXXXXXXXXXXXXXXXXXXXXAIGNILFISGLTCVIGIQRTFFFFFQRHKLKAS 319
+IG+GL+ AIGNILF+SG++ IG + T FF + K S
Sbjct: 225 EIGLGLSGFGVLFSFLGIIMLFDKGFLAIGNILFVSGVSLTIGPKSTVQFFTKPKNHKGS 284
Query: 320 VAFFSGITIVLLGWPMIGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLNLPIIRGI 496
+AF G +VL+GWP GM+AE YGF+ LFRGF P+A +L+ P G + + P++ +
Sbjct: 285 IAFGIGFFLVLIGWPFFGMLAEAYGFVKLFRGFWPTAAVYLQKSPTFGWIFHHPLVTSV 343
>10_05_0115 -
9300918-9300972,9301299-9301396,9301476-9301556,
9301635-9301726,9301832-9301859
Length = 117
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/91 (38%), Positives = 52/91 (57%)
Frame = +2
Query: 137 QKIGVGLAXXXXXXXXXXXXXXXXXXXXAIGNILFISGLTCVIGIQRTFFFFFQRHKLKA 316
Q+IG+GL A+GNILF+SGL IG++ T FF + K
Sbjct: 9 QEIGIGLTGFGVFFSFLGIIFFFDKGLLAMGNILFLSGLGLTIGLKSTLQFFTKPKNYKG 68
Query: 317 SVAFFSGITIVLLGWPMIGMIAEMYGFLLLF 409
+++F +G+ +VL+GWP GM+ E YGF++LF
Sbjct: 69 TISFGAGLLLVLIGWPFFGMLLEAYGFIVLF 99
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = -1
Query: 414 PLNNSKKPYISAIIPIMGQPSSTIVIPLKKATDAFSLCRWKKKKNVLWMPITHVRPLMNR 235
P++ PY S ++P PSST +P T F W V+W P+
Sbjct: 546 PISTPSSPY-SPLVPT--PPSSTTPMPFDPNTAPFPCSYWLSHPGVIWGLFGFWCPMARL 602
Query: 234 ILPMARRPLSNNRSTP 187
P A P ++ + P
Sbjct: 603 FGPTAAAPFGHDLTVP 618
>07_03_1572 -
27815760-27815819,27816374-27816494,27816580-27816620,
27816737-27816797,27817549-27817635,27817728-27817855,
27817935-27818050,27820671-27820789,27820892-27820983,
27821082-27821169,27822523-27822902
Length = 430
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 326 FFSGITIVLLGWPMIGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLNLP 481
+FSG+ + ++G ++G +E LLLF FLP +NFL VP L + P
Sbjct: 321 YFSGMALAVVG--ILGHFSET---LLLF--FLPEVLNFLCSVPQLFKFVPCP 365
>07_03_0037 +
12709014-12709104,12709407-12709612,12710033-12710097,
12710143-12710404,12711332-12711448,12711779-12712056,
12712304-12712406
Length = 373
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 550 SALESYHVPTIVSRYPIDDPSYYRKIQ*RPQN 455
S L+ Y +P R+P+ DP+ ++Q RP++
Sbjct: 316 SLLDYYPLPKRGERFPVSDPNMMPRLQPRPES 347
>06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026
Length = 267
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 261 THVRPLMNR--ILPMARRPLSNNRSTPRNRNVIPKPARPTP 145
TH++ + + I P+ +PL R PR ++ P P P P
Sbjct: 110 THIKKKLRKMGIDPVTHQPLEPPRPPPREQDATPPPPPPPP 150
>01_01_0471 -
3467275-3467351,3467526-3467895,3468258-3468555,
3468680-3469734,3469823-3470467
Length = 814
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Frame = -1
Query: 300 RWKKKKNVLWMPITHVRPLMNRI-----LPMARRPLSNNRSTPRNRNV------IPKPAR 154
RW+ + + MP + + + LP+A ++ N + P+N V P P R
Sbjct: 268 RWRPETHTFHMPCGEITITLQDVAMILGLPIAGHAVTVNPTEPQNELVERYLGKAPPPDR 327
Query: 153 PTPIFCVSVISSIFNN 106
P P VS + + FNN
Sbjct: 328 PRPGLRVSWVRAEFNN 343
>07_03_1384 +
26177053-26177227,26178754-26178823,26179427-26179469,
26179888-26179965,26180010-26180027,26180103-26180187,
26180273-26180355,26180489-26180546,26181258-26181368,
26181769-26181826,26182005-26182101,26182585-26182620,
26183107-26183137,26183993-26184046,26184159-26184301,
26184411-26184560,26185084-26185317,26185450-26185509,
26185974-26186204,26186829-26186981
Length = 655
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Frame = -1
Query: 696 ILFSQHDFFSLSFHKFYTHTDTI---INIQYIK-HYLKF*FYLYKEKCLYARIRH*NHTM 529
IL +D F L HK Y + + QY K H+LK L K+ + + N
Sbjct: 108 ILKRDYDLFGLDHHKVYVFAQDVLEKVKEQYQKEHFLKIDLPLLKDSSVQSTDYAFNVLG 167
Query: 528 FRPLFPAILSTIPLIIGRFS-SDPKTGTILKK 436
+ I PL+I +S P+ ++K
Sbjct: 168 YESFMHTIADEHPLLIMVYSKGSPRCAQFIEK 199
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 368 IGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLNLPIIRGIVDRIAGNN 520
+G + GF L+RG+LPS I +VP +G LN + + D + N
Sbjct: 192 LGSVYREEGFRALYRGWLPSVIG---VVPYVG--LNFAVYESLKDWLLQTN 237
>03_01_0354 + 2785998-2787623
Length = 541
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +2
Query: 323 AFFSGITIVLLGWPMIG---MIAEMYGFLLLFRGFLPSAINFL 442
AF G+ I W M G + +YGF F F P+A F+
Sbjct: 385 AFMLGLAIPYHHWTMPGNQVIFVFLYGFTFFFANFGPNATTFI 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,189,999
Number of Sequences: 37544
Number of extensions: 354478
Number of successful extensions: 1091
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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