Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2e21
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23521-7|AAC46811.2|  141|Caenorhabditis elegans Hypothetical pr...   129   2e-30
U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   5.7  
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p...    28   7.6  
U64847-8|AAQ91904.1|  558|Caenorhabditis elegans Acyltransferase...    28   7.6  
U64847-7|AAB04876.1|  718|Caenorhabditis elegans Acyltransferase...    28   7.6  
U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine...    28   7.6  

>U23521-7|AAC46811.2|  141|Caenorhabditis elegans Hypothetical
           protein F41C3.4 protein.
          Length = 141

 Score =  129 bits (311), Expect = 2e-30
 Identities = 60/130 (46%), Positives = 84/130 (64%)
 Frame = +2

Query: 122 EITDTQKIGVGLAXXXXXXXXXXXXXXXXXXXXAIGNILFISGLTCVIGIQRTFFFFFQR 301
           E++ T++IGVGL                     AIGN+LFI G+T +IG+QRT  FFF+ 
Sbjct: 5   EVSTTKQIGVGLTTFGFFFIFLGVLMFLDSALLAIGNLLFIVGITFIIGVQRTLVFFFEF 64

Query: 302 HKLKASVAFFSGITIVLLGWPMIGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLNLP 481
            KLK S+ FF GI +VL G+P+ GMIAE +GF++LF GFLP  +N LR +P + ++  LP
Sbjct: 65  RKLKGSILFFGGILVVLFGYPLFGMIAECWGFIVLFGGFLPGIVNLLRSIPGISTITYLP 124

Query: 482 IIRGIVDRIA 511
            IR ++DR+A
Sbjct: 125 GIRQVLDRLA 134


>U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical
           protein F32A5.2b protein.
          Length = 859

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 237 RILPMARRPLSNNRSTPRNR-NVIPKPARPTP-IFCVS 130
           R+  + RRP +N R  PR R N+I    RPTP +F V+
Sbjct: 139 RLQTVTRRPFANRRPAPRQRTNIIRPTIRPTPRVFTVT 176


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 237 RILPMARRPLSNNRSTPRNR-NVIPKPARPTP-IFCVS 130
           R+  + RRP +N R  PR R N+I    RPTP +F V+
Sbjct: 280 RLQTVTRRPFANRRPAPRQRTNIIRPTIRPTPRVFTVT 317


>Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical
           protein C55A1.3 protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 317 SVAFFSGITIVLLGWPM-IGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLNLPIIR 490
           ++ F + I ++L+  P  +G +  M+G  +LF G LP+   FL   P+L  L N  IIR
Sbjct: 263 ALVFQTLIPVILMHIPASLGFLFSMFGQSILFFGELPTFSVFL--YPILDPLPNFFIIR 319


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 192  TPRNRNVIPKPARPTPIFC 136
            TP NRNV P+ A   P FC
Sbjct: 1252 TPNNRNVFPEEATTFPSFC 1270


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 192  TPRNRNVIPKPARPTPIFC 136
            TP NRNV P+ A   P FC
Sbjct: 1252 TPNNRNVFPEEATTFPSFC 1270


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 393  ASCCCSEDSCLLPLIS 440
            + CCCS D+CL P +S
Sbjct: 1660 SGCCCSTDACLDPTVS 1675


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 393  ASCCCSEDSCLLPLIS 440
            + CCCS D+CL P +S
Sbjct: 1660 SGCCCSTDACLDPTVS 1675


>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
           protein F35G12.3a protein.
          Length = 1077

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 334 TEEGDGRLQLVPLEEEEKRPLDADHTCQTTYEQDIANG*ETFIEQQKYSE 185
           T+E D R  L   +EEEK  +D     QT  ++ I N  ++ I++Q+ ++
Sbjct: 655 TDEDDERQLLSETDEEEKYEIDEKEEIQTKKDETI-NEEDSEIDEQRMND 703


>U64847-8|AAQ91904.1|  558|Caenorhabditis elegans
           Acyltransferase-like protein 6,isoform b protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 375 IPIMGQPSSTIVIPLKKATDAFSLCRWKKKKNVLWMPITHVRPLMNRIL 229
           + I+ +PS T +   +   DA SLC W + + +   P   +R L++ +L
Sbjct: 357 LTIVSRPSGTKLSIDQIVEDALSLCDWLQFEFMFCRPCDSLRELVHNVL 405


>U64847-7|AAB04876.1|  718|Caenorhabditis elegans
           Acyltransferase-like protein 6,isoform a protein.
          Length = 718

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 375 IPIMGQPSSTIVIPLKKATDAFSLCRWKKKKNVLWMPITHVRPLMNRIL 229
           + I+ +PS T +   +   DA SLC W + + +   P   +R L++ +L
Sbjct: 517 LTIVSRPSGTKLSIDQIVEDALSLCDWLQFEFMFCRPCDSLRELVHNVL 565


>U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical
           protein C03B1.13 protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -2

Query: 662 LFINFTLTRTQSSIFNILNTI*SFSFIYTKKNVSMLAFGT 543
           L++  T  R+   I N+LN+  +FS I+TKK+++   +GT
Sbjct: 392 LYLPETKGRSSEEIQNMLNST-TFSGIHTKKHINEDLYGT 430


>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
           serine/threonine kinase protein.
          Length = 1077

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 334 TEEGDGRLQLVPLEEEEKRPLDADHTCQTTYEQDIANG*ETFIEQQKYSE 185
           T+E D R  L   +EEEK  +D     QT  ++ I N  ++ I++Q+ ++
Sbjct: 655 TDEDDERQLLSETDEEEKYEIDEKEEIQTKKDETI-NEEDSEIDEQRMND 703


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,459,700
Number of Sequences: 27780
Number of extensions: 328991
Number of successful extensions: 1155
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)