Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2e17
         (445 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2EK22 Cluster: Putative uncharacterized protein; n=1; ...    31   8.5  
UniRef50_P57182 Cluster: Flagellar motor switch protein fliM; n=...    31   8.5  

>UniRef50_A2EK22 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 438

 Score = 31.5 bits (68), Expect = 8.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 24  VRPTSINLAYLTNEFCFLCATEDFQNENHLLRFTNKR 134
           ++ T I L Y  +  C LCAT+ F  + H   FT+K+
Sbjct: 125 IKNTGIKLRYALSLNCILCATQ-FSPDGHYFAFTDKK 160


>UniRef50_P57182 Cluster: Flagellar motor switch protein fliM; n=1;
           Buchnera aphidicola (Acyrthosiphon pisum)|Rep: Flagellar
           motor switch protein fliM - Buchnera aphidicola subsp.
           Acyrthosiphon pisum (Acyrthosiphon pisumsymbiotic
           bacterium)
          Length = 315

 Score = 31.5 bits (68), Expect = 8.5
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = -3

Query: 224 YNLDPKLSDLYLSRSAEIESSGKYIA--LTAQTLISKTK*MVFILEVFSST*KAKFVR*I 51
           YN    + D+      + +   K I    + ++L++K K M FI   FS   K  FV+ I
Sbjct: 95  YNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNK-KIMKFITNAFSEIYKKYFVKEI 153

Query: 50  RQINTCWSYELVRYNF 3
              NT   ++  +YNF
Sbjct: 154 NFFNTKTFFDFKKYNF 169


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,868,922
Number of Sequences: 1657284
Number of extensions: 2731482
Number of successful extensions: 7068
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7065
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)