Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2e13
         (211 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0444 + 3357048-3357425,3357841-3357969,3358165-3358284,335...    25   6.3  

>07_01_0444 +
           3357048-3357425,3357841-3357969,3358165-3358284,
           3358661-3358753,3358935-3359014,3359180-3359293,
           3359530-3359603,3359757-3359833,3360558-3360641,
           3360732-3360824,3360901-3361008,3361130-3361204,
           3361507-3361911
          Length = 609

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 156 ICSRNATVFFICIKRDLLKCIFF*PYCFH 70
           I   N +    C  R  L+CIFF   C H
Sbjct: 180 IIQENRSSAIDCFGRKFLRCIFFMACCVH 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,720,960
Number of Sequences: 37544
Number of extensions: 69059
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)