Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2e13
         (211 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81027-3|CAB02684.1|   72|Caenorhabditis elegans Hypothetical pr...    28   1.0  
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z66500-4|CAA91305.2|  630|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AF016447-4|AAG24011.2|  352|Caenorhabditis elegans Serpentine re...    26   3.2  
AF000264-4|AAC71125.3|  631|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z81531-3|CAB04315.1|  381|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z81027-3|CAB02684.1|   72|Caenorhabditis elegans Hypothetical
           protein AH10.4 protein.
          Length = 72

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 127 KKNCCISGAYIGVYFCIFNKLFSFIK 204
           K+ CC +  ++ + F IF KLF+ IK
Sbjct: 33  KRTCCTTEQFLILKFLIFLKLFTLIK 58


>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical
           protein T05A7.11 protein.
          Length = 1200

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 89  KKIHLSKSLFIQIKKTVAFLEHILVFIFVYSINCFLLLKK 208
           K++     LF+ IKKT+ FLE+    I      C + +KK
Sbjct: 771 KRVWFIFGLFLNIKKTILFLENQFFGIKFLKTLCNVRVKK 810


>Z66500-4|CAA91305.2|  630|Caenorhabditis elegans Hypothetical
           protein T05C12.4 protein.
          Length = 630

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 192 KQFIEYTKINTNICSRNATVFFICIKRDLLKCIFF*PYCF 73
           +  IE   INTN CSR+       +   LL CI   P  F
Sbjct: 532 QSLIENYSINTNQCSRSLAPVQSLLLSSLLLCISLLPCVF 571


>AF016447-4|AAG24011.2|  352|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 18 protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -2

Query: 207 FFNKRKQFIEYTKINTNICSRNATVFFICIKRDLLKCIFF*PYCFHSINRIIFSSVILNC 28
           F  ++  F    +   + CS    +   CI  D L C ++  Y  H   R+I ++ I  C
Sbjct: 113 FVREKVSFCAPFRYTFSFCSMGLAICTYCIYIDRLACAYYKNYTKH--QRLILAAQI--C 168

Query: 27  QL 22
           QL
Sbjct: 169 QL 170


>AF000264-4|AAC71125.3|  631|Caenorhabditis elegans Hypothetical
           protein F43E2.3 protein.
          Length = 631

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 168 INTNICSRNAT--VFFICIKRDLLKCIFF*PYCFHSINRIIFSSVILNCQLSDPHE 7
           I+ N+C  N    +  IC++  +  C+F    C  +I +   SSVI   +   P E
Sbjct: 332 ISKNLCESNGKDRLTPICLEHLIHICLFGDELCIEAIQKGCISSVIRIMKNDQPQE 387


>Z81531-3|CAB04315.1|  381|Caenorhabditis elegans Hypothetical
           protein F36D3.3 protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 162 TNICSRNATVFFICIKRDLLKCI 94
           TN+ S   T++FIC+   L+ CI
Sbjct: 270 TNLRSATHTLYFICMVGMLISCI 292


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 109 ISFYTNKKNCCISGAYIGVYF 171
           ++FY   K+C + GA  G+YF
Sbjct: 399 LAFYFTIKDCVMIGAATGLYF 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,750,885
Number of Sequences: 27780
Number of extensions: 81785
Number of successful extensions: 218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)