Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2e13
         (211 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   0.91 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   2.1  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   2.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   2.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   3.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 0.91
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 25   LAVQNHTGKNDPIDTMKAIRLEK 93
            +  +N  G +DP DT+  I  E+
Sbjct: 952  IVAENEIGASDPSDTVTIITAEE 974


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 2.1
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 26  WQFRITLEKMIRLIL*KQYG*KKIHLSKSLFIQIKK 133
           W   + +++  + I+ K Y    ++ SKS  I I++
Sbjct: 465 WNAPLNVQRAAKCIIGKDYSLPMVNHSKSSRINIER 500


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 123 CIKRDLLKCIFF*PYCFHSINRIIFS 46
           CI   +   +F+  YC  +IN  I++
Sbjct: 38  CIHPTVFSVLFWLGYCNSAINPCIYA 63


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 123 CIKRDLLKCIFF*PYCFHSINRIIFS 46
           CI   +   +F+  YC  +IN  I++
Sbjct: 486 CIHPTVFSVLFWLGYCNSAINPCIYA 511


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -2

Query: 189 QFIEYTKINTNICSRNATVFFICIKRDLLKC 97
           Q I  T+ +  + S+N  +FF  +    + C
Sbjct: 300 QDIFNTQSSAKVMSKNGVLFFGLVNNSAIGC 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,862
Number of Sequences: 438
Number of extensions: 943
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)