Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2e10
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.39 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    29   0.51 
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    26   3.6  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   6.3  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   6.3  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   8.3  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   8.3  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 440 LSSTIVSTKLQIVVNNNHLAFYDSLQKYWCLYATDNE 550
           LS+ I    LQ VV+N  ++ +  +  + C YATD+E
Sbjct: 615 LSACIADNDLQNVVDNAEVSEWKDIFVFICTYATDDE 651


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 436 SFVRIIKHYVVNFSNCLLYYSKANFPF 356
           SF+R  K+Y+ N S+ +L  + A FP+
Sbjct: 158 SFMRYWKYYITNVSSIVLQITNATFPY 184


>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 316 CTSIYTLCLFSINRFWRNLWFRWCIF*CFVF*VSK 212
           C  I TL    +N+  R  WF  C+  CF++ + K
Sbjct: 10  CAMISTL---KVNKIERGYWFIQCLRYCFIYIIKK 41


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 297 CVCLVSTGFGEICGLGGVYFNVLSSEFPKLGSLLPKMSANV 175
           C  L+      I G+   YF+ L+  FP L S + KMS+ +
Sbjct: 258 CDSLIEARPNTIHGVTESYFSSLNDTFPSLVSTVVKMSSKL 298


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 215 GNSEDKTLKYTPPKPQISPKPVDTKQT 295
           G+  D+++   P +PQ+ PK ++   T
Sbjct: 57  GSDNDESMAEMPLEPQVEPKSIENNYT 83


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 267 EICGLGGVYFNVLSSEFPKLGSLLPKMSANVVL 169
           E C LG +Y  +L+++FP   +  P+M  N+ L
Sbjct: 88  EYCPLGDLYECILNNDFPNAKN-QPEMIKNIFL 119


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +2

Query: 401 IHNIVLYDSNKTTLSSTIVSTKLQIVVNNNHLAFYDSLQKYWCLYATDN 547
           I  + ++D  +  LSS +VS   + ++N      Y   ++Y C +   N
Sbjct: 309 IEGVAIHDQKEKELSSNLVSDVAKKIINEVTGHGYKEAREYSCSFPECN 357


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
 Frame = +2

Query: 113 CATMLENDDFDDDFFTPVASTTLADIFGNKEPNFGN-----SEDKTLKYTPPKP 259
           C      + F+DD F P+  +    +    E N G       +D  +K  PPKP
Sbjct: 238 CNLCGSENSFNDDGFNPLVGSQHDGVESRPELNVGTIDFKVGKDYWIKEDPPKP 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,836
Number of Sequences: 5004
Number of extensions: 46018
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)