Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2e10
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846... 30 1.2
03_02_0822 + 11530250-11530442,11530728-11531129,11531430-115318... 30 1.2
10_01_0338 + 3717089-3717205,3717725-3718297 30 1.6
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337... 29 2.8
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 29 3.7
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185... 29 3.7
11_04_0041 - 12690287-12690816,12691087-12691378 28 4.9
08_01_0654 - 5639419-5641449 28 4.9
05_04_0392 - 20889699-20891726 28 4.9
10_08_1047 - 22549376-22551271 28 6.5
02_02_0109 + 6830802-6833412,6833491-6833861 27 8.5
>04_02_0007 +
8464923-8465155,8466037-8466591,8466645-8467662,
8467768-8468485,8468651-8468937
Length = 936
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 344 AYVLKGKVGFAIIKQTIGEIHNIVLYDSNKTTLSSTIVSTKLQIVVNNNHLAFY 505
A VL+G I TIG++HN+ + D + LS I ST + N +HL +
Sbjct: 385 ALVLRGNQISGRIPSTIGKLHNLYILDLSINKLSGQIPST----IGNISHLGHF 434
>03_02_0822 +
11530250-11530442,11530728-11531129,11531430-11531878,
11533568-11533744
Length = 406
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 292 NTVCICLCTNCI*MDSKCICIKRE-SWLCYNKA 387
N +C+C CT+ + C C+K S+L YN +
Sbjct: 234 NKMCVCKCTSSCLGEDNCSCLKTNGSYLPYNSS 266
>10_01_0338 + 3717089-3717205,3717725-3718297
Length = 229
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +2
Query: 182 ADIFGNKEPNFGNSEDKTLKYTPPKPQISPKP-VDTKQTQCVYACALTAYEWTQNAYVLK 358
A + G +EP+F +E K + + S KP D+++ Q CA + YV K
Sbjct: 47 AFVSGREEPSFAKTEPKPSTSSSLTTESSMKPSPDSREIQAP-GCAPKFRDGPHTDYV-K 104
Query: 359 GKVGFAIIKQTIGEIHNIVLYDSNKTTL 442
+G I E+ ++L++S ++TL
Sbjct: 105 TLIGILPDNTPIEEVMAVLLHESPESTL 132
>12_01_0428 +
3374519-3375423,3376663-3376742,3377206-3377217,
3377337-3377379,3378304-3380332
Length = 1022
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 377 IIKQTIGEIHNIVLYDSNKTTLSSTIVS-TKLQIVVNNNHLAFYDSLQKYWCLYATDNEV 553
++ IG++ ++ + D +T L S TKL+ + HL F+D W L N++
Sbjct: 715 VMPSRIGDLEHLQMLDVRQTQLKDLPKSVTKLEKL---EHLLFFDQGDSGWMLPQGINKM 771
Query: 554 KIITEILKKFDIV 592
K + + LKK +V
Sbjct: 772 KALRQ-LKKAAVV 783
>12_01_0237 +
1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 131 NDDFDDDFFTPVASTTLADIFGNKEP 208
+DD DD+ +P + TL IFG K+P
Sbjct: 635 DDDIDDNADSPTSGFTLIAIFGIKDP 660
>11_01_0240 +
1852186-1852371,1854183-1854237,1854391-1856267,
1856342-1856500,1856692-1856863,1856965-1857263,
1857539-1857844
Length = 1017
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 131 NDDFDDDFFTPVASTTLADIFGNKEP 208
+DD DD+ +P + TL IFG K+P
Sbjct: 613 DDDIDDNADSPTSGFTLIAIFGIKDP 638
>11_04_0041 - 12690287-12690816,12691087-12691378
Length = 273
Score = 28.3 bits (60), Expect = 4.9
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +2
Query: 170 STTLADIFGNKEPNFGNSEDKTLKYTPPKPQISPKP-VDTKQTQCVYACALTAYEWTQNA 346
S TL + G +EP+F E + + SP+P D+K+ Q CA + +
Sbjct: 153 SGTLVFMSGREEPSFAEPEPEPSTSLGLTRESSPEPSPDSKEIQAP-GCAPKFRDDPHSD 211
Query: 347 YVLKGKVGFAIIKQTIGEIHNIVLYDSNKTTL 442
Y K G I E+ ++L++S ++TL
Sbjct: 212 YE-KTLTGILPDNMLIEEVMTVLLHESPESTL 242
>08_01_0654 - 5639419-5641449
Length = 676
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 161 PVASTTLADIFGNKEPNFGNSEDKTLKY 244
P L D FG KEPN G + D+ + Y
Sbjct: 385 PKVQQLLKDYFGGKEPNRGVNPDEAVAY 412
>05_04_0392 - 20889699-20891726
Length = 675
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 161 PVASTTLADIFGNKEPNFGNSEDKTLKY 244
P L D FG KEPN G + D+ + Y
Sbjct: 385 PKVQQLLKDYFGGKEPNRGVNPDEAVAY 412
>10_08_1047 - 22549376-22551271
Length = 631
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 248 PPKPQISPKPVDTKQTQCVY-ACALTAYEW 334
PP P++SP+ VD ++C A A+T + W
Sbjct: 32 PPPPRLSPRLVDATVSRCPSDALAITFFLW 61
>02_02_0109 + 6830802-6833412,6833491-6833861
Length = 993
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 285 VSTGFGEICGLG--GVYFNVLSSEFPKLGSLLPKMS 184
+ GFG++ L +YFN LS P LLPK++
Sbjct: 306 IPNGFGKLTNLTLLFLYFNKLSGSIPPSVGLLPKLT 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,187,472
Number of Sequences: 37544
Number of extensions: 240148
Number of successful extensions: 723
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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