Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2e07
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 84 2e-17
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 83 3e-17
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 61 2e-10
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 43 6e-05
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 34 0.026
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 27 4.0
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 4.0
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 25 9.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.2
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 83.8 bits (198), Expect = 2e-17
Identities = 39/92 (42%), Positives = 56/92 (60%)
Frame = +2
Query: 98 FIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGF 277
F+++AIS + V VFSKS+CP+CK AK+ K P K EL++ ++G+ IQ L + T
Sbjct: 8 FVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQ 67
Query: 278 RTVPQVFINGNCVGGGSDVKALYESGKLEPML 373
TVP +F +GG SD+ L SG L M+
Sbjct: 68 STVPSIFFRNQFIGGNSDLNKLRSSGTLTKMI 99
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 83.4 bits (197), Expect = 3e-17
Identities = 37/94 (39%), Positives = 61/94 (64%)
Frame = +2
Query: 89 IQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQL 268
++ F+ A++ + VVVF+KSYCPYC + V K +V +++ ++G+ IQ L +
Sbjct: 4 VESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKK 63
Query: 269 TGFRTVPQVFINGNCVGGGSDVKALYESGKLEPM 370
TG RTVP +FI+ VGG SD +AL++ G+L+ +
Sbjct: 64 TGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSL 97
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 61.3 bits (142), Expect = 2e-10
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Frame = +2
Query: 107 EAISKDKVVVFSKSYCPYCKLAKDVFE---KVKQPIKVIELNERDDGNTIQDNLAQLTGF 277
E ++ V++FS+ CPY AK + ++ P V+E+ + + ++D L+ ++
Sbjct: 61 EVFLENPVIIFSRPGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDI 120
Query: 278 RTVPQVFINGNCVGGGSDVKALYESGKLEPML 373
T+P +F+ G+ +GG V+ALY+ KL+ L
Sbjct: 121 STMPNIFVGGHSIGGSDSVRALYQEEKLQSTL 152
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 42.7 bits (96), Expect = 6e-05
Identities = 26/105 (24%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Frame = +2
Query: 80 SIDIQQFIKEAISKDKVVVFSKS-----YCPYCKLAKDVF--EKVKQPIKVIELNERDDG 238
S +Q +++A+ +D +V+F K C + A + E V K++ N +
Sbjct: 22 STQTRQALEQAVKEDPIVLFMKGTPTRPMCGFSLKAIQILSLENVASD-KLVTYNVLSN- 79
Query: 239 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 373
+ +++ + + + + T+PQ++ING VGG + ++++SG+L +L
Sbjct: 80 DELREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.9 bits (74), Expect = 0.026
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 239 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 373
++++ L + + T PQ++I G VGG V + E+G+L+ ML
Sbjct: 198 DSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +3
Query: 144 NLTVLTVSWQKMFLRK*SNQLKL--LS*MNVMMETPFKIISHN*LVSELYLK 293
N T+ ++S K F R+ N + + LS N +ETPF + H+ +VSE +++
Sbjct: 36 NNTIDSLSIAKQF-REIKNNINISHLSRENYWVETPFGKVFHSEVVSEEFMQ 86
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 467 NLKRK*HFICTPKYKFKYANNNKTI 393
N K HF+C KF+ NN K++
Sbjct: 57 NSKANNHFLCNSPLKFEIFNNEKSV 81
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 9.2
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +2
Query: 2 DSYFHLEIQYMGSQSGKITRSSKMAGSIDIQQFIKEAIS--KDKVVVFSKSYCPYCKLAK 175
DS + G + KI S + +D F K + KD +V F +C YCK
Sbjct: 119 DSLTQFVSEKTGIKKRKIVLPSNVV-ELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLA 177
Query: 176 DVFEKVKQPIK 208
+E + + K
Sbjct: 178 PTYETLGKVFK 188
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 122 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 214
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 122 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 214
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 122 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 214
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,327
Number of Sequences: 5004
Number of extensions: 63169
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -