Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2e06
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 285 4e-78
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 150 2e-37
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 147 2e-36
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 144 8e-36
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 130 3e-31
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 118 6e-28
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 117 1e-27
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 115 8e-27
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 110 2e-25
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 107 2e-24
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 89 4e-19
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 85 1e-17
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 77 3e-15
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 51 1e-07
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 28 1.5
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 2.0
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 3.5
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 4.6
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 4.6
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 25 8.0
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 285 bits (699), Expect = 4e-78
Identities = 127/147 (86%), Positives = 134/147 (91%)
Frame = +3
Query: 75 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 254
MALKRINREL DLG+DPP+ CSAGP G+DLFHWQATIMGP DSPY GGVFFL+IHFPTDY
Sbjct: 1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 255 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLV 434
PFKPPKV FTTRIYHPNINSNGSICLDILR QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLV 120
Query: 435 PEIARIYKTDREKYNELAREWTRKYAM 515
PEIA +YKTDR +Y AREWTRKYA+
Sbjct: 121 PEIAHVYKTDRSRYELSAREWTRKYAI 147
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 150 bits (363), Expect = 2e-37
Identities = 72/148 (48%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Frame = +3
Query: 75 MAL-KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 251
MAL KRI +E++ L RDPP A P ++L +++ T+ GP S Y+GG F L + P +
Sbjct: 1 MALPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDE 60
Query: 252 YPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPL 431
YP PP V F T+IYHPN++ G ICL L+ WSPAL I VLLSI +L+ PNPDDPL
Sbjct: 61 YPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPL 120
Query: 432 VPEIARIYKTDREKYNELAREWTRKYAM 515
++A+I+K + + AREWT+KYA+
Sbjct: 121 DNDVAKIWKENEPQAIANAREWTKKYAV 148
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 147 bits (356), Expect = 2e-36
Identities = 65/149 (43%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Frame = +3
Query: 69 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 248
S + +R+ +E DL P ++LFHW T +GP DS Y GG F ++ FP
Sbjct: 5 SPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPL 64
Query: 249 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ-WSPALTISKVLLSICSLLCDPNPDD 425
DYPF+PP + FTTRIYHPN +S G++CL IL+ Q + P++ + VL I LL +PNPDD
Sbjct: 65 DYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDD 124
Query: 426 PLVPEIARIYKTDREKYNELAREWTRKYA 512
PLV IA Y+ DR ++++AR++ ++A
Sbjct: 125 PLVASIAEQYRNDRPSFDKIARDYVEQFA 153
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 144 bits (350), Expect = 8e-36
Identities = 63/144 (43%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Frame = +3
Query: 84 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 263
+RI +EL D+ +D A +D+ H + GP +PY+GG F + I P DYPF+
Sbjct: 7 RRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFR 66
Query: 264 PPKVAFTTRIYHPNINS-NGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPE 440
PPK+ F T+IYHPN++S G+ICLDIL+ QWSP T+ L+S+ SLLC P P +P +
Sbjct: 67 PPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQ 126
Query: 441 IARIYKTDREKYNELAREWTRKYA 512
+A++Y + +++ AREWT YA
Sbjct: 127 VAQVYLQNYQQFVRTAREWTSSYA 150
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 130 bits (313), Expect = 3e-31
Identities = 56/142 (39%), Positives = 90/142 (63%)
Frame = +3
Query: 69 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 248
S A +R+ R+ + + +DPPA SA P +++ W A I+GP D+P++ G F L + F
Sbjct: 2 STTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDE 61
Query: 249 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDP 428
YP KPP V F + ++HPN+ +NG +CLDIL+ +WSP ++ +L SI SLL DPN P
Sbjct: 62 QYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASP 121
Query: 429 LVPEIARIYKTDREKYNELARE 494
E A++++ ++++Y R+
Sbjct: 122 ANAEAAQLHRENKKEYVRRVRK 143
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 118 bits (285), Expect = 6e-28
Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 14/158 (8%)
Frame = +3
Query: 75 MALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDSPYQGGVFFLTIHFPTD 251
MAL+R+ +E ++L + P +AGP ED F W I GP +P++GG++ T+ FP+D
Sbjct: 5 MALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSD 64
Query: 252 YPFKPPKVAFTTRIYHPNINSNGSICLDILRA-------------QWSPALTISKVLLSI 392
YP PP + F +HPN+ +G++C+ IL A +WSP ++ K+LLS+
Sbjct: 65 YPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSV 124
Query: 393 CSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRK 506
S+L +PN + + ++++ DRE+Y + R RK
Sbjct: 125 MSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 117 bits (282), Expect = 1e-27
Identities = 54/120 (45%), Positives = 76/120 (63%), Gaps = 2/120 (1%)
Frame = +3
Query: 159 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLD 335
D+FHW+A I GP ++PY+GG + L IH YP PP V F T+I HPNI+ +NG +C+D
Sbjct: 33 DMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMD 92
Query: 336 ILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DREKYNELAREWTRKYA 512
IL+ WSPA ++ L+I SLL + + PL + A++ +T D+ YN L R T YA
Sbjct: 93 ILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYA 152
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 115 bits (276), Expect = 8e-27
Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Frame = +3
Query: 84 KRINRELQDLGRDPPAQCSAGPHGE-DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPF 260
KR+ EL L SA P + +L HW TI GP D+ Y+G F +++ FP +YP+
Sbjct: 31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPY 90
Query: 261 KPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPE 440
PP + FT+ ++HPN++ +G+ICLDIL+ +WS + +LLS+ SLL +PN PL +
Sbjct: 91 SPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQ 150
Query: 441 IARIYKTDREKYNEL 485
A ++ D +Y L
Sbjct: 151 AAELWSKDPIEYKRL 165
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 110 bits (264), Expect = 2e-25
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 7/155 (4%)
Frame = +3
Query: 69 SQMALKRINRELQDLGRDPP-----AQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLT 233
S + R+ E + RD P C + G DL +W+ I G + ++GG++ LT
Sbjct: 2 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 61
Query: 234 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ--WSPALTISKVLLSICSLLC 407
+ FP +YP +PPK FT ++HPN+ +G++CL IL + W PA+TI ++LL I LL
Sbjct: 62 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLD 121
Query: 408 DPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 512
DPN P E ++K D+ +Y + R R+ A
Sbjct: 122 DPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 156
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 107 bits (256), Expect = 2e-24
Identities = 48/153 (31%), Positives = 86/153 (56%), Gaps = 14/153 (9%)
Frame = +3
Query: 90 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP 266
+ ++L+++ ++PP S G + +F W+ I+GP D+ Y+GG F T+ FP DYP P
Sbjct: 10 LRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMP 69
Query: 267 PKVAFTTRIYHPNINSNGSICLDILR-------------AQWSPALTISKVLLSICSLLC 407
PK+ FTT I+HPN++ NG +C+ IL +W P + +L+S+ S+L
Sbjct: 70 PKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLS 129
Query: 408 DPNPDDPLVPEIARIYKTDREKYNELAREWTRK 506
PN + P + A+ ++ + +++ + R R+
Sbjct: 130 SPNDESPANIDAAKEFRENPQEFKKRVRRLVRR 162
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 89.4 bits (212), Expect = 4e-19
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Frame = +3
Query: 189 GPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRAQWSPAL 365
GP ++PY GG++ + + P++YP+K P + F RI+HPNI+ +GS+CLD++ WSP
Sbjct: 38 GPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMF 97
Query: 366 TISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 512
+ + + + LL PN DPL E A + + Y R++ +YA
Sbjct: 98 DMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYIARYA 147
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 84.6 bits (200), Expect = 1e-17
Identities = 38/100 (38%), Positives = 55/100 (55%)
Frame = +3
Query: 192 PVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTI 371
P + Y+GG F I +YP PPKV +IYHPNI+ G++CL+ILR W+P L +
Sbjct: 60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNL 119
Query: 372 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAR 491
+ +L+ + L PN +DPL E A D + + R
Sbjct: 120 NSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVR 159
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 76.6 bits (180), Expect = 3e-15
Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Frame = +3
Query: 69 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 248
S+ A KR+ +E L ++P A P E++ W I GP D+PY+GG + T+ FP
Sbjct: 3 SKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPP 62
Query: 249 DYPFKPPKVAFTTRIYHPNINSNGSICL---DILRAQWSPALTISKVLLSICSLL-CDPN 416
DYPFKPP + T +N +CL D W+P+ +S +L+ + S + D
Sbjct: 63 DYPFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEI 120
Query: 417 PDDPLV--PEIARIYKTDREKYN 479
+V R Y D +++N
Sbjct: 121 TTGGIVTSESTRRTYAKDTKRFN 143
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 51.2 bits (117), Expect = 1e-07
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Frame = +3
Query: 129 AQCSAGPHGED---LFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 299
+ CS G D L W ATI+GP S ++ ++ L IH +YP PP V F +RI
Sbjct: 24 SSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINL 83
Query: 300 PNIN-SNGSI---CLDILRAQWSPALTISKVLLSI 392
P ++ G + +D LR W ++ VLL +
Sbjct: 84 PGVDGETGKVNPHKIDCLR-HWKREYSMETVLLDL 117
Score = 25.4 bits (53), Expect = 8.0
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Frame = +3
Query: 333 DILRAQWS-----PALTISKVLLSICSLLCDPN-PD-DPLVPEIARIYK--TDRE--KYN 479
DI + W+ PA ++ + + + CD N PD P+V ++RI D E K N
Sbjct: 35 DITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVN 94
Query: 480 ----ELAREWTRKYAM**VNCDINKTYTHTSPQPGLYPP 584
+ R W R+Y+M V D+ K +S + PP
Sbjct: 95 PHKIDCLRHWKREYSMETVLLDLKKEMASSSNRKLPQPP 133
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 66 NSQMALKRINRELQDLGRDPPAQCSAG---PHGEDLFHWQATIMGPVDSPYQGGVF 224
+S A K I+ + Q+ + A AG P G + W AT M P+ +P GG F
Sbjct: 246 SSSAAAKNISEDAQNRMTNATASIMAGSALPSGGKKYSWMATDMTPM-TPAVGGGF 300
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 357 PALTISKVLLSICSLLCDPNPDD---PLVPEIARIYKTD 464
PA++I LL++ + NP D P+V +I RI+K+D
Sbjct: 344 PAVSIDGTLLNVGDWVLIRNPADSSKPIVSQIYRIWKSD 382
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +1
Query: 130 HNVRQAHTVKIC---SIGKPQLWAQLTVLIKEEFSSLPYISLQTTLSNHQ 270
H V +T C ++ P LWA L + F Y L+T N+Q
Sbjct: 406 HTVFSGYTTVWCPQNAVFVPGLWANLATRYRASFMLTDYAGLKTIAYNYQ 455
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 246 TDYPFKPPKVAFTTRIYHPNINSN 317
TD FKP + T +++P+I +N
Sbjct: 113 TDKKFKPNDTSITANVFNPSIQNN 136
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 351 WSPALTISKVLLSICSLLCDPNPDDPLVPEI 443
+SPA I KVL + L DPN + P++P+I
Sbjct: 291 FSPAPFIQKVLSRL--LPSDPNVEMPMIPQI 319
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +3
Query: 144 GPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY 296
G HG LF M P PY+G T H + ++ + TT Y
Sbjct: 146 GYHGNTLFALSVGGMKPRKQPYEGVFSHTTSHVSPCFEYRYKENGETTEEY 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,856
Number of Sequences: 5004
Number of extensions: 73574
Number of successful extensions: 221
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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