Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2e06
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 309 2e-84
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 309 2e-84
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 143 1e-34
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 131 4e-31
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 131 4e-31
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 119 2e-27
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 117 7e-27
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 116 2e-26
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 101 4e-22
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 101 5e-22
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 101 5e-22
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 100 9e-22
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 93 1e-19
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 93 1e-19
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 89 4e-18
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 88 5e-18
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 78 7e-15
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 76 3e-14
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 73 2e-13
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 72 5e-13
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 66 2e-11
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 66 2e-11
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 66 3e-11
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 65 5e-11
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 52 3e-07
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 49 4e-06
Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 43 2e-04
Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 31 0.81
AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormo... 30 1.4
Z81461-6|CAB03837.1| 272|Caenorhabditis elegans Hypothetical pr... 29 2.5
U41007-7|AAA82268.3| 516|Caenorhabditis elegans Intramembrane p... 29 3.3
AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical... 29 3.3
Z92829-13|CAB07344.2| 337|Caenorhabditis elegans Hypothetical p... 29 4.3
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho... 28 7.5
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho... 28 7.5
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 27 9.9
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 27 9.9
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 27 9.9
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 27 9.9
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 27 9.9
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 309 bits (758), Expect = 2e-84
Identities = 137/147 (93%), Positives = 144/147 (97%)
Frame = +3
Query: 75 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 254
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SPYQGGVFFLTIHFPTDY
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 255 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLV 434
PFKPPKVAFTTRIYHPNINSNGSICLDILR+QWSPALTISKVLLSICSLLCDPNPDDPLV
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 435 PEIARIYKTDREKYNELAREWTRKYAM 515
PEIARIYKTDRE+YN+LAREWT+KYAM
Sbjct: 121 PEIARIYKTDRERYNQLAREWTQKYAM 147
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 309 bits (758), Expect = 2e-84
Identities = 137/147 (93%), Positives = 144/147 (97%)
Frame = +3
Query: 75 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 254
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SPYQGGVFFLTIHFPTDY
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 255 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLV 434
PFKPPKVAFTTRIYHPNINSNGSICLDILR+QWSPALTISKVLLSICSLLCDPNPDDPLV
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 435 PEIARIYKTDREKYNELAREWTRKYAM 515
PEIARIYKTDRE+YN+LAREWT+KYAM
Sbjct: 121 PEIARIYKTDRERYNQLAREWTQKYAM 147
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 143 bits (347), Expect = 1e-34
Identities = 69/143 (48%), Positives = 91/143 (63%)
Frame = +3
Query: 84 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 263
+RI +E Q L DP SA P + ++ I GP DSP+ GGVF L + P +YP
Sbjct: 7 RRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMA 66
Query: 264 PPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 443
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNP+DPL ++
Sbjct: 67 APKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPEDPLATDV 126
Query: 444 ARIYKTDREKYNELAREWTRKYA 512
A +KT+ + + A++WT YA
Sbjct: 127 AEQWKTNEAEAIKTAKQWTMNYA 149
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 131 bits (317), Expect = 4e-31
Identities = 54/137 (39%), Positives = 91/137 (66%)
Frame = +3
Query: 84 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 263
+R+ R+ + L DPPA S P +++ W+A I GP ++P++ G F L++ F +YP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 264 PPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 443
PP V F ++++HPN+ ++GSICLDIL+ +WSP ++ +L SI SLL +PNP+ P
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 444 ARIYKTDREKYNELARE 494
A++Y+ +R +Y + ++
Sbjct: 127 AQLYQENRREYEKRVQQ 143
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 131 bits (317), Expect = 4e-31
Identities = 54/137 (39%), Positives = 91/137 (66%)
Frame = +3
Query: 84 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 263
+R+ R+ + L DPPA S P +++ W+A I GP ++P++ G F L++ F +YP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 264 PPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 443
PP V F ++++HPN+ ++GSICLDIL+ +WSP ++ +L SI SLL +PNP+ P
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 444 ARIYKTDREKYNELARE 494
A++Y+ +R +Y + ++
Sbjct: 127 AQLYQENRREYEKRVQQ 143
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 119 bits (287), Expect = 2e-27
Identities = 56/120 (46%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Frame = +3
Query: 156 EDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICL 332
E+L + I GP D+PY GG+F L I P YPF PP V F+T+I+HPN++S G ICL
Sbjct: 34 ENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICL 93
Query: 333 DILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 512
DIL+ QW+ +LT+ VLLSI +L+C P P DP +A+ Y + A WT K+A
Sbjct: 94 DILKDQWAASLTLRTVLLSIQALMCTPEPKDPQDAVVAKQYMEKPAVFKATAEYWTTKFA 153
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 117 bits (282), Expect = 7e-27
Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 14/157 (8%)
Frame = +3
Query: 78 ALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 254
ALKR+ E ++L PP A P ED F W+ I GP ++ + GVF I FP DY
Sbjct: 5 ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 255 PFKPPKVAFTTRIYHPNINSNGSICLDILRA-------------QWSPALTISKVLLSIC 395
P PPK+ FT I+HPNI ++G +C+ IL A +WSP +I K+LLS+
Sbjct: 65 PLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVV 124
Query: 396 SLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRK 506
S+L +PN + P A++++ DR ++ ++A RK
Sbjct: 125 SMLAEPNDESPANVSAAKMWREDRAQFEKIADSLVRK 161
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 116 bits (279), Expect = 2e-26
Identities = 57/147 (38%), Positives = 86/147 (58%), Gaps = 2/147 (1%)
Frame = +3
Query: 78 ALKRINRELQDLGR-DPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 254
A +R+ +EL DL A + +L W ++ P PY G F + I FP DY
Sbjct: 3 ATRRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDY 61
Query: 255 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQ-WSPALTISKVLLSICSLLCDPNPDDPL 431
PFKPPKVAF T+IYHPN++ G CL I+ A+ W PA +V++++ SL+ +P P P+
Sbjct: 62 PFKPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEPSHPI 121
Query: 432 VPEIARIYKTDREKYNELAREWTRKYA 512
++A ++ D +K+ + A E TRK+A
Sbjct: 122 RADVAEEFQKDHKKFMKTAEEHTRKHA 148
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 101 bits (243), Expect = 4e-22
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 14/149 (9%)
Frame = +3
Query: 90 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP 266
+ ++L D+ R P SAG D++ W+ ++GP D+ Y+GG F + FP DYP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 267 PKVAFTTRIYHPNINSNGSICLDIL-------------RAQWSPALTISKVLLSICSLLC 407
PK+ F + I+HPNI+ G++C+ IL +W P T+ +LLS+ S+L
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
Query: 408 DPNPDDPLVPEIARIYKTDREKYNELARE 494
DPN + P + A K RE Y E ++
Sbjct: 128 DPNFESPANVDAA---KMQRENYAEFKKK 153
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 101 bits (242), Expect = 5e-22
Identities = 60/168 (35%), Positives = 89/168 (52%), Gaps = 20/168 (11%)
Frame = +3
Query: 69 SQMALKRINRELQDLGRDPPAQCSAGPHGE----DLFHWQATIMGPVDSPYQGGVFFLTI 236
S +AL R+ R+ +++ AG H E +L + I GP +PY GG F + +
Sbjct: 16 SNLALARVTRKCKEVANASDIT-EAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKV 74
Query: 237 HFPTDYPFKPPKVA---------------FTTRIYHPNINSN-GSICLDILRAQWSPALT 368
P YPF+PPKV F TRI+HPNI+S G+ICLDIL+ +W+ +LT
Sbjct: 75 DIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLT 134
Query: 369 ISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 512
+ VLLS+ ++LC P P DP +A+ + + + A WT +A
Sbjct: 135 LRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYWTSYFA 182
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 101 bits (242), Expect = 5e-22
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = +3
Query: 75 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTI 236
MALKRI +EL DLGRDPPAQCS G G+DL+HWQATIMGP +SPYQGG+FFLTI
Sbjct: 1 MALKRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMGPPESPYQGGIFFLTI 54
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 100 bits (240), Expect = 9e-22
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 13/147 (8%)
Frame = +3
Query: 69 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 248
S AL+ + EL++L P + + ++LF W I GP + YQGG F +I FP+
Sbjct: 8 SSGALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPS 67
Query: 249 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRA-------------QWSPALTISKVLLS 389
+YP+ PP + FTT+++HPN+ NG +C+ IL + +W+P ++ +LLS
Sbjct: 68 NYPYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLS 127
Query: 390 ICSLLCDPNPDDPLVPEIARIYKTDRE 470
+ SLL +PN P + + +Y+ +E
Sbjct: 128 VISLLNEPNTSSPANVDASVMYRKWKE 154
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/120 (34%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Frame = +3
Query: 159 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 338
+LF+W+ I G D+ ++GG++ + + F D+P PPK F ++HPN+ +G++CL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 339 L--RAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 512
L W P+++I ++L+ I LL PN +DP E +IY +R +Y + ++ KYA
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYA 156
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/120 (34%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Frame = +3
Query: 159 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 338
+LF+W+ I G D+ ++GG++ + + F D+P PPK F ++HPN+ +G++CL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 339 L--RAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 512
L W P+++I ++L+ I LL PN +DP E +IY +R +Y + ++ KYA
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYA 156
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Frame = +3
Query: 189 GPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRAQWSPAL 365
GP D+ Y+ GV+ + + P YPFK P + F +I+HPNI+ ++G++CLD++ W+
Sbjct: 41 GPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQAWTALY 100
Query: 366 TISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 512
++ + + LL PN DPL E AR+Y E+Y RE+ ++A
Sbjct: 101 DLTNIFDTFLPQLLTYPNAADPLNGEAARLYIHKPEEYRRTCREYVMRFA 150
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 88.2 bits (209), Expect = 5e-18
Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Frame = +3
Query: 174 QATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICL-DILRA 347
Q I G ++PY+GG+F L I YPFK P V F T+I+HP+++ +G+ICL D+
Sbjct: 382 QGIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNG 441
Query: 348 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 512
W ++TI KVL+ I S + + N +P+ EI +RE + + A WT+++A
Sbjct: 442 VWPVSMTIYKVLIVIQSWMSNFNEKEPIDVEILEQATNNREVFEKTAEFWTKRFA 496
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 77.8 bits (183), Expect = 7e-15
Identities = 45/116 (38%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Frame = +3
Query: 69 SQMALKRINRELQDLGRDPPAQCSAG--PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHF 242
S A +R+ +EL L + P DL W+ ++G + Y G VF L F
Sbjct: 2 SDAATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTF 61
Query: 243 PTDYPFKPPKVAFT--TRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLL 404
YPF P+V F T HP+I SNG ICL IL W+PAL++ V LSI S+L
Sbjct: 62 GPQYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSML 117
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 75.8 bits (178), Expect = 3e-14
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Frame = +3
Query: 69 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 248
S +AL+R+ ++ Q L ++P A P ++ W+ I+G +PY+GG++ + FP
Sbjct: 6 STVALQRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPK 65
Query: 249 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ---WSPALTISKVLLSICSLLCDPNP 419
D+PFKPP + T + +N +CL I W+PA T+S ++ + S + D P
Sbjct: 66 DFPFKPPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQP 123
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 72.9 bits (171), Expect = 2e-13
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Frame = +3
Query: 192 PVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ------W 353
P + Y+GG F I P +Y PP V T+++HPNIN +GSICL ILR W
Sbjct: 67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGW 126
Query: 354 SPALTISKVLLSICSLLCD-PNPDDPLVPEIARIYKTDREKYNELAREWTRKY 509
P ++ V+ + SL D + +D L + A+++ +RE +N RE+ +Y
Sbjct: 127 RPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISRY 179
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 71.7 bits (168), Expect = 5e-13
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Frame = +3
Query: 153 GEDLF-HWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 329
G D++ W T+ GP SP++GG + ++++F +P PP F T ++HPN++ GSI
Sbjct: 64 GADIWCSWICTVPGPRGSPWEGGEYEVSVNFHK-WPIIPPICEFKTPLHHPNVDLRGSIY 122
Query: 330 LDILRAQ-WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAR--EWT 500
L +L + WS ++ K+L I +LL P+ E Y+ RE Y AR WT
Sbjct: 123 LKMLEQEHWSSETSLKKLLREISNLLATPDLTQAANIEAWMEYENQRENYEAKARAYAWT 182
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Frame = +3
Query: 69 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 248
S A++R+ ++ L +DP A P+ +++ W + G D+P+ GG ++ + F
Sbjct: 17 SSSAVRRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKE 76
Query: 249 DYPFKPPKVAFTTRIYHPNINSNGSICL---DILRAQWSPALTISKVLLSICSLLCDPNP 419
++P+ PP + T + +N +CL D W+P T+S +L+ + S + + +P
Sbjct: 77 NFPWSPPAITMITP--NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFMNENSP 134
Query: 420 DDPLV---PEIARIYKTDREKYNELAREW 497
+ P+ R+Y +++N W
Sbjct: 135 AAGSIAGTPQDQRMYAAASKEFNVKVYNW 163
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 12/82 (14%)
Frame = +3
Query: 183 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR-----IYHPNINSNGSICLDIL-- 341
I GP D+PY G+F I FPT YPF PPK AF T ++PN+ ++G ICL IL
Sbjct: 449 ISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGT 508
Query: 342 -----RAQWSPALTISKVLLSI 392
+W+P ++ +VL+SI
Sbjct: 509 WEGRPEEKWNPYCSLMQVLVSI 530
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 3/159 (1%)
Frame = +3
Query: 39 VESQYNST*NSQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGG 218
+ QYN+ ++R+ +E +L R P A P ++LF W TI G + + ++GG
Sbjct: 1 MSEQYNT---KNAGVRRLMKEAMEL-RQPTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGG 56
Query: 219 VFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL---RAQWSPALTISKVLLS 389
++ I FP DYP KPP + T + N +CL I W P+ +I LL+
Sbjct: 57 IYHGRIIFPADYPMKPPNLILLTP--NGRFELNKKVCLSISGYHPETWLPSWSIRTALLA 114
Query: 390 ICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRK 506
+ L P+ + + K +R++ +L+ EW K
Sbjct: 115 LIGFL--PSTPGGALGSLDYPPK-ERQRLAKLSCEWKCK 150
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 64.9 bits (151), Expect = 5e-11
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Frame = +3
Query: 81 LKRINRELQDLGRDPPAQCSAGPHGE---DLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 251
L RI +E+ DL ++ E D+F ++ G + Y+ +F LT+ +
Sbjct: 15 LSRIRKEIADLAKNKRRFIKDFRKIEKCKDIFQFKIIGDGVL---YKNMIFTLTLDVNVE 71
Query: 252 YPFKPPKVAFTTRIYHPNINS-NGSICLD-ILRAQWSPALTISKVLLSICSLLCDPNPDD 425
YPFKPP + F +YHPN++ +C +L+ W P T+ VLL++ LL +P+
Sbjct: 72 YPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEPDLSR 131
Query: 426 PLVPEIARIYKTDR----EKYNELAREW 497
P+ + A Y ++ +K ELA++W
Sbjct: 132 PVNIDAAHDYIHNKVEFVKKSTELAKKW 159
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Frame = +3
Query: 162 LFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSI---C 329
L W A+I+GP +PY+ ++ L I +YP +PP V FTT+++ +N SNG I
Sbjct: 38 LTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTTKVHMVGVNQSNGVIDKRN 97
Query: 330 LDILRAQWSPALTISKVLLSI 392
L LR WS + I VL I
Sbjct: 98 LTTLR-NWSNSYMIKTVLEDI 117
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 48.8 bits (111), Expect = 4e-06
Identities = 41/128 (32%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Frame = +3
Query: 162 LFHWQATIMGPVDSPYQGGVFFLTIHF-PTDYPFKPPKVAFTTRIYHPNINSNGSICLDI 338
LFH I GPV S Y+GG FF I+ P P+V F T I+HPN+ G+ D+
Sbjct: 63 LFH--VIIDGPVGSIYEGGTFFADINIQPYQNHSLIPRVCFHTFIFHPNLGKYGN--WDM 118
Query: 339 LRAQWSPALTISKVLLSICSLLCDPNPD----------DPLVPEIARIYKTDREKYNELA 488
QW + + I + + D D P I+R+ K D K+ A
Sbjct: 119 RGIQWERRSNLEVLYNFIVEGMRNVKYDIERRNLAQLEDMSQPNISRLAKEDWPKFERTA 178
Query: 489 REWTRKYA 512
RE+ K A
Sbjct: 179 REFVMKMA 186
>Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical
protein Y69H2.6 protein.
Length = 292
Score = 43.2 bits (97), Expect = 2e-04
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Frame = +3
Query: 99 ELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP--PK 272
E ++ R P P + F W I + GG+F IH P ++P P+
Sbjct: 27 EFVEVCRAPIDGIFVSPSANNKFLWFGVIFVR-KGIFGGGIFRFNIHIPLEFPDASDLPR 85
Query: 273 VAFT-TRIYHPNI-NSNGSICLDILRAQ-WSP---ALTISKVLLSICSLLCDPNPDDPLV 434
V F + ++HP I + +CL+ + W +L V+L D + D +
Sbjct: 86 VIFEQSNLFHPLICTKSKELCLNRSFPEGWKKEKHSLRRVLVVLQRSFYSYDVDTDKCIN 145
Query: 435 PEIARIYKTDREKYNELARE 494
PE + +YK R+K+ E+A+E
Sbjct: 146 PEASVLYKEHRDKFREIAKE 165
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 183 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLD 335
I GP D+PY+ GVF + + FP +YP P++ F T I++ + S G + ++
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCAVEPSTGQVHIE 86
>Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical
protein C17D12.5 protein.
Length = 139
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 222 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSL 401
+ +T+ P +PF PP + T + N L + QW P+ I VL+ CS+
Sbjct: 51 YIVTVAIPPKFPFSPPAITCKT-------DKNMKF-LFLEENQWKPSTGIVAVLIEACSV 102
Query: 402 LC--DPNPDDPLVPEI 443
+ D P P++P I
Sbjct: 103 ISRRDLVPRAPVLPRI 118
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = +1
Query: 214 EEFSSLPYISLQTTLSNHQKLHSQHVFIILT*TVMVPSVLTFCVHSGHQRSPYPKCCSQS 393
EE++ + + T Q Q+V +++T ++M PS++T + G Q + P+
Sbjct: 1202 EEYTPMNFAPPPTFTYPQQMPMMQYVPVMMTSSMMTPSMMTPSMMPGQQIAMVPQQMMMQ 1261
Query: 394 AHFYAIP 414
HF +P
Sbjct: 1262 PHFSYVP 1268
>AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 166 protein.
Length = 363
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 225 FLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSIC 395
F I+ P P + ++ +I + +++ + D LR QW P ++ KVL+ C
Sbjct: 300 FCLINNPRSAPSRLLEIISINQILNRQFHASYKL-FDALRKQWDPTMSFQKVLVESC 355
>Z81461-6|CAB03837.1| 272|Caenorhabditis elegans Hypothetical
protein C04F12.8 protein.
Length = 272
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 276 AFTTRIYHPNINSNGSICLDILRAQWSP-ALTISKVLLSICSLLCDPNPDDPLVPEIARI 452
AF+ Y P+++S S+ LR +SP +L S + L+ L P P + +
Sbjct: 200 AFSASTYRPSVSSASSLATSSLRRAYSPSSLPASSLALTTSYSLFSPAPTRKPRQSLFSM 259
Query: 453 YKT 461
Y T
Sbjct: 260 YST 262
>U41007-7|AAA82268.3| 516|Caenorhabditis elegans Intramembrane
protease (impas)family protein 3 protein.
Length = 516
Score = 29.1 bits (62), Expect = 3.3
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = -2
Query: 553 CVYVLLMSQLTHHMAYFLVHSRANSLYFSLSV 458
C++++L+ + HM+++ + + +Y SL V
Sbjct: 315 CIHIILLESFSQHMSFYFYYHEESMMYASLLV 346
>AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical
protein T12B5.3 protein.
Length = 304
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 263 FERVVCREMYGKEENSSLIRTVNWA--HNCGLPMEQIF 156
FER+ C E + +N+ T W HNC +P+EQ+F
Sbjct: 185 FERLACLEQW---KNAKTFETP-WVLVHNCQIPIEQLF 218
>Z92829-13|CAB07344.2| 337|Caenorhabditis elegans Hypothetical
protein F10A3.6 protein.
Length = 337
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 363 LTISKVLLSICSLLCDPNP--DDPLVPEIARIYKTDREKYNELAREW 497
++IS + S+C + P+P D+ +PE + Y + E+YN L ++
Sbjct: 140 ISISFLWFSMCYFVNGPSPMKDENFLPEFQKNYCMEPEEYNYLGPQY 186
>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4
homolog protein 1, isoformb protein.
Length = 1420
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 339 LRAQWSPALTISKVLLSICSLLCDPNPD--DPLVPEIARIYKTDR 467
L +WS A+ +K + S LLC D + L+ E+ +Y D+
Sbjct: 606 LEMEWSSAVQCAKSVKSALELLCTTYCDIVESLIREVVEVYADDQ 650
>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4
homolog protein 1, isoforma protein.
Length = 1418
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 339 LRAQWSPALTISKVLLSICSLLCDPNPD--DPLVPEIARIYKTDR 467
L +WS A+ +K + S LLC D + L+ E+ +Y D+
Sbjct: 606 LEMEWSSAVQCAKSVKSALELLCTTYCDIVESLIREVVEVYADDQ 650
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 366 TISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNE 482
TIS +C LL + +P+ PL I R++ +R K ++
Sbjct: 303 TISFPPSQVCDLLIEHDPEMPLTKVINRMFGEERPKLSD 341
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 350 VVTSAHHIQSVALNLLTSMRSQPRRPFG 433
+V S+ HI +V +++ +M + RRP+G
Sbjct: 834 IVRSSSHIDAVKRDIMRTMSTTSRRPYG 861
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 350 VVTSAHHIQSVALNLLTSMRSQPRRPFG 433
+V S+ HI +V +++ +M + RRP+G
Sbjct: 814 IVRSSSHIDAVKRDIMRTMSTTSRRPYG 841
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 350 VVTSAHHIQSVALNLLTSMRSQPRRPFG 433
+V S+ HI +V +++ +M + RRP+G
Sbjct: 814 IVRSSSHIDAVKRDIMRTMSTTSRRPYG 841
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 366 TISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNE 482
TIS +C LL + +P+ PL I R++ +R K ++
Sbjct: 303 TISFPPSQVCDLLIEHDPEMPLTKVINRMFGEERPKLSD 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,008,326
Number of Sequences: 27780
Number of extensions: 433776
Number of successful extensions: 1234
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -