Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2e01
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    26   4.5  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    25   6.0  
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    25   7.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.9  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 195 PPLNKN*KKYISCNC 151
           PPLN+N KKY+   C
Sbjct: 448 PPLNRNGKKYVISQC 462


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 1   IFYHSFVSRRYI--YLFQIILLCMSHFYNGYLNTFL 102
           IF H   S  Y+  Y+   I + ++ +YNGY+  FL
Sbjct: 202 IFLHFLRSCFYLVQYIVAYIAMLLAMYYNGYVILFL 237


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 22  SRRYIYLFQIILLCMS-HF--YNGYLNTFLVYIVAI 120
           +R+Y+ +  IIL  MS H+  YNG++  FLV I A+
Sbjct: 119 ARKYLLVLPIILFLMSTHYTHYNGWM--FLVNIWAL 152


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 263 IYV*IVYLNNLAYSKFTTLYVHIHPLIKIEKNIFRAIV 150
           +Y+      N++  KF +LY  I PL+++    F  ++
Sbjct: 768 VYLMKALFRNISGGKFDSLYKEILPLLQVMLECFNRLI 805


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 30 IYLSISNHFIVYVTFLQRLFKYF 98
          IYLS++N  + Y    +R FK++
Sbjct: 19 IYLSVANKIMFYCILNERAFKHY 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,535
Number of Sequences: 5004
Number of extensions: 39866
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)